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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G018950
Reference: TK1151 Chr: Chr01 Coordinates: 4827329-4837190 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2415 bp · TkA01G018950|TK1151|cDNA

TATCAAGCTTCCACAGTCCATATATACTACCCCTTTTGCTCATCTTTCTTCACAAACGCCTCCTTCTCTCCCCCTCTCTGAACCAGTCTTTCCATTTTTGGCAGCGGTTTATCGGATCAAACTGATAAACCAAACCAACATTGTCAATTGAATTGCACAAATCACATTTTTGATGGAGAATTTTACGAGGATGGGAGCTGGAGCTCTTCTGTTTATGCTTATAGCGATTGTACCTATGGCTTTAGGACGTGGACATGATT...

CDS

Download CDS FASTA

4314 bp · TkA01G018950|TK1151|CDS

ATGGGAGCTGGAGCTCTTCTGTTTATGCTTATAGCGATTGTACCTATGGCTTTAGGACGTGGACATGATTATGGCCAGGCACTTTCCAAGAGCATTCTGTTCTTTGAAGCTCAGAGATCTGGTTACCTTCCTGGTAATCAAAGAGTGAAATGGAGAGGAAACTCTGGTCTCCTTGACGGAAAAGCCAGTGGGGTGGATCTGGTTGGAGGATACTACGATGCAGGGGATAATGTGAAGTTTGGGCTTCCAATGGCGTTCAC...

Protein

Download Protein FASTA

1437 aa · TkA01G018950|TK1151|PROTEIN

MGAGALLFMLIAIVPMALGRGHDYGQALSKSILFFEAQRSGYLPGNQRVKWRGNSGLLDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSILEYGSQMSASGELGHAMDAVKWGSDYLIKAHPQPHVLYGEVGDGNTDHYCWQRPEDMTTSRSAYRIDQNNPGSDLAGETAAAMAAASIVFRRANPAYSRELLTHAHQFSDLPSITEIKQIPLECSHRLPRDTIDCRGKYDSSISVAQKYYRSVSGYADELLWAAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G018950
TK1151 IDTkA01G018950
OH-1004 IDLXL04_005756
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)86.700
Protein coverage (%)TK1151 100.000 / OH-1004 99.524
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G018950
LocationChr01:4827329-4837190 (+)
DescriptionSimilar to At1g64390: Endoglucanase 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g64390 Endoglucanase 6. No verified direct reference in this release
At4g11050 Endoglucanase 19. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0220100 Hydrolyzes 1,4-beta-glycosyl linkages of 1,4-beta-glucans and 1,3-1,4-beta-glucans. No verified direct reference in this release
Os05g0212300 Endoglucanase 15. No verified direct reference in this release
Os01g0219600 Endoglucanase 1. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005756 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0030245 cellulose catabolic process Biological Process
GO:0071555 cell wall organization Biological Process
GO:0005576 extracellular region Cellular Component
GO:0008810 cellulase activity Molecular Function
GO:0030246 carbohydrate binding Molecular Function
KEGG gene cross-reference
ath:AT1G64390
ath:AT4G11050
dosa:Os01g0219600
dosa:Os01g0220100
dosa:Os05g0212300
osa:4324641
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.264
Rank 1 · TkA01G018950 · TK1151
Endoplasmic reticulum0.141
Rank 2 · TkA01G018950 · TK1151
Extracellular0.124
Rank 3 · TkA01G018950 · TK1151
Cytoplasm0.121
Rank 4 · TkA01G018950 · TK1151
Nucleus0.121
Rank 5 · TkA01G018950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00759Glyco_hydro_924-503 aa
PF13855LRR_8200-212 aa
PF09478CBM49560-639 aa
PF29594LRR_SKP2924-979 aa
PF25013LRR_Zer-1924-985 aa
PF25019LRR_R13L1-DRL21937-982 aa
PF23598LRR_14938-1229 aa
PF24758LRR_At5g56370938-1005 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G018950PF00759Glyco_hydro_9245036.2e-160533.9
TkA01G018950PF13855LRR_82002122.6e-1453.4
TkA01G018950PF09478CBM495606391.3e-2693.4
TkA01G018950PF29594LRR_SKP29249794.7e-1659.6
TkA01G018950PF25013LRR_Zer-19249850.0002222.1
TkA01G018950PF25019LRR_R13L1-DRL219379821.89.2
TkA01G018950PF23598LRR_1493812292.6e-1143.6
TkA01G018950PF24758LRR_At5g5637093810051.1e-0526.0
TkA01G018950PF13516LRR_69489623.5e-0936.7
TkA01G018950PF12799LRR_49499872.1e-2073.0
TkA01G018950PF29594LRR_SKP294910034.7e-1659.6
TkA01G018950PF13855LRR_89499812.6e-1453.4
TkA01G018950PF25372LRR_FBXL1594910131.1e-0937.9
TkA01G018950PF00560LRR_19499630.006517.0
TkA01G018950PF27089PRAME_C95110280.859.3
TkA01G018950PF13516LRR_69729913.5e-0936.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q42059Arabidopsis thalianasp|Q42059|GUN6_ARATH Endoglucanase 673.000%Swiss-ProtHigh
Q8L7I0Arabidopsis thalianasp|Q8L7I0|GUN19_ARATH Endoglucanase 1970.500%Swiss-ProtHigh
Q5NAT0Oryza sativa subsp. japonicasp|Q5NAT0|GUN2_ORYSJ Endoglucanase 262.100%Swiss-ProtHigh
Q6L4I2Oryza sativa subsp. japonicasp|Q6L4I2|GUN15_ORYSJ Endoglucanase 1560.400%Swiss-ProtHigh
Q5NAT8Oryza sativa subsp. japonicasp|Q5NAT8|GUN1_ORYSJ Endoglucanase 161.100%Swiss-ProtHigh

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