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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G015590
Reference: TK1151 Chr: Chr01 Coordinates: 3993468-3997000 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2469 bp · TkA01G015590|TK1151|cDNA

TAACCTTTTAGCTATCAAGCGTGTTCAAAGCGGGTTATCCATTTATGATTTCATCCGTCTCTATTGCCCGCTAGGGTTTGTACAAGATCTCCCCCCTTTTCCTCTACGATTCGCCAACGACAACTCCTCCTAAACCCCAAACCTTCTAATCCATACCCCATCCAAATTGATTCCGAATCTTGAAGCTAACCATGGCATCTCGAGAAGGAGATCCTTCTTTAGGTTATCTAACTCGGAAGGAAACCGAGGTCAAGCTTCCT...

CDS

Download CDS FASTA

2148 bp · TkA01G015590|TK1151|CDS

ATGGCATCTCGAGAAGGAGATCCTTCTTTAGGTTATCTAACTCGGAAGGAAACCGAGGTCAAGCTTCCTCGACCAACTAGGGTTAAGAACAAAACCCCAGCTCCAATCCAAATCACAGCAGAACAGATTCTCCGCGAAGCACGAGAGCGTCAGGAAGCCGAAATCCGACCACCGAAGCAGAAAATCACCGACTCTTCAGAGCTCGCAGACTATCGTCTCCGCAAACGCAAAGAATTCGAAGACCTAATTCGGAGAGTGCG...

Protein

Download Protein FASTA

715 aa · TkA01G015590|TK1151|PROTEIN

MASREGDPSLGYLTRKETEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSSELADYRLRKRKEFEDLIRRVRWNKSVWVKYAKWEESQKDFNRARSVWERALDVDYRDHTMWLKYADVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMGWEPDQQAWLSYIKFELRYNEIERARSIYERFVKCIPKVTAWIRFAKFEMKNGEITRSRNCYERAVDKLADDEEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G015590
TK1151 IDTkA01G015590
OH-1004 IDLXL04_005786
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 99.443
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G015590
LocationChr01:3993468-3997000 (+)
DescriptionSimilar to CRNKL1: Crooked neck-like protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005786 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000245 spliceosomal complex assembly Biological Process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:1990416 cellular response to brain-derived neurotrophic factor stimulus Biological Process
GO:1990830 cellular response to leukemia inhibitory factor Biological Process
GO:0000974 Prp19 complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0071006 U2-type catalytic step 1 spliceosome Cellular Component
KEGG gene cross-reference
dme:Dmel_CG3193
dre:393920
hsa:51340
mmu:66877
rno:100910202
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.929
Rank 1 · TkA01G015590 · TK1151
Cytoplasm0.141
Rank 2 · TkA01G015590 · TK1151
Cell membrane0.021
Rank 3 · TkA01G015590 · TK1151
Mitochondrion0.015
Rank 4 · TkA01G015590 · TK1151
Golgi apparatus0.011
Rank 5 · TkA01G015590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08640U3_assoc_615-57 aa
PF13424TPR_1240-52 aa
PF08640U3_assoc_673-102 aa
PF23241HAT_PRP39_C75-184 aa
PF29376PRP6_TPR76-128 aa
PF23233HAT_Syf1_CNRKL1_N78-222 aa
PF05843Suf79-318 aa
PF23914TPR_CcmH_CycH80-117 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G015590PF08640U3_assoc_615571.79.3
TkA01G015590PF13424TPR_1240520.03714.9
TkA01G015590PF08640U3_assoc_6731021.79.3
TkA01G015590PF23241HAT_PRP39_C751844.2e-46157.2
TkA01G015590PF29376PRP6_TPR761281.8e-30106.8
TkA01G015590PF23233HAT_Syf1_CNRKL1_N782224e-43147.7
TkA01G015590PF05843Suf793182.1e-2383.4
TkA01G015590PF23914TPR_CcmH_CycH801178.4e-0936.2
TkA01G015590PF29407CFAP70_TPR_C891610.0001322.3
TkA01G015590PF23231HAT_Syf1_CNRKL1_C901522.3e-40139.3
TkA01G015590PF23220HAT_Syf1_M911255e-0627.3
TkA01G015590PF13428TPR_14921323.2e-31105.3
TkA01G015590PF02184HAT931021.3e-2796.2
TkA01G015590PF07719TPR_2931203e-0937.0
TkA01G015590PF13174TPR_6931170.006417.8
TkA01G015590PF29386CFAP70_mid_TPR971552.6e-0834.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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