TkA01G009100 | RubberDandelionOmics

Gene overview

TkA01G009100

Reference: TK1151 Chr: Chr01 Coordinates: 2454142-2454811 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

345 bp · TkA01G009100|TK1151|cDNA

ATGTGTAGAGAAGAAGGAGTTGACCGGATCTTCGTGGATGCTGCTCACGCAATTGGGTCAATTAGGGTTGATGTCAAAGAAATTGGGGCTGATTTCTACACTAGCAACCTCCATAAATGGCTATTCTGTCCACCTTCAGTCGCATTCTTGTACTGTAAGAATCCAGAGAAATCTAATCTCCACCATCCCGTGGTATCTCATGAATACGGAAATGGGTTAGCCATAGAAAGTTCATGGATCGGCACAATAGACTACAGTGC...

CDS

Download CDS FASTA

345 bp · TkA01G009100|TK1151|CDS

ATGTGTAGAGAAGAAGGAGTTGACCGGATCTTCGTGGATGCTGCTCACGCAATTGGGTCAATTAGGGTTGATGTCAAAGAAATTGGGGCTGATTTCTACACTAGCAACCTCCATAAATGGCTATTCTGTCCACCTTCAGTCGCATTCTTGTACTGTAAGAATCCAGAGAAATCTAATCTCCACCATCCCGTGGTATCTCATGAATACGGAAATGGGTTAGCCATAGAAAGTTCATGGATCGGCACAATAGACTACAGTGC...

Protein

Download Protein FASTA

114 aa · TkA01G009100|TK1151|PROTEIN

MCREEGVDRIFVDAAHAIGSIRVDVKEIGADFYTSNLHKWLFCPPSVAFLYCKNPEKSNLHHPVVSHEYGNGLAIESSWIGTIDYSAQLMVPEALEFVNSVSQKDRPCNKVKPQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G009100`
TK1151 ID	TkA01G009100
OH-1004 ID	LXL04_025349
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	86.300
Protein coverage (%)	TK1151 100.000 / OH-1004 96.875 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G009100

Location Chr01:2454142-2454811 (+)

Description Similar to Os01g0290100: Putative L-cysteine desulfhydrase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g62130`	Catalyzes the production of hydrogen sulfide (H2S) from cysteine.	No verified direct reference in this release
`At5g26600`	May catalyze the production of hydrogen sulfide (H2S) from cysteine.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0290100`	Catalyzes the production of hydrogen sulfide (H2S) from cysteine.	No verified direct reference in this release
`Os01g0290600`	Catalyzes the production of hydrogen sulfide (H2S) from cysteine.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025349 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0019450 L-cysteine catabolic process to pyruvate Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016829 lyase activity Molecular Function

GO:0016846 carbon-sulfur lyase activity Molecular Function

GO:0080146 L-cysteine desulfhydrase activity Molecular Function

KEGG gene cross-reference

aor:AO090026000291

ath:AT3G62130

ath:AT5G26600

dosa:Os01g0290100

dosa:Os01g0290600

osa:4325157

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.434

Rank 1 · TkA01G009100 · TK1151

Nucleus0.180

Rank 2 · TkA01G009100 · TK1151

Peroxisome0.109

Rank 3 · TkA01G009100 · TK1151

Endoplasmic reticulum0.103

Rank 4 · TkA01G009100 · TK1151

Lysosome / Vacuole0.094

Rank 5 · TkA01G009100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00266Aminotran_510-63 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G009100	`PF00266`	Aminotran_5	10	63	2.9e-08	33.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M1R1`	Arabidopsis thaliana	sp\|Q9M1R1\|LCYD1_ARATH L-cysteine desulfhydrase	73.000%	Swiss-Prot	High
`Q3E6S9`	Arabidopsis thaliana	sp\|Q3E6S9\|CNIF3_ARATH Probable L-cysteine desulfhydrase, chloroplastic	73.500%	Swiss-Prot	High
`Q9LGZ2`	Oryza sativa subsp. japonica	sp\|Q9LGZ2\|LCYD1_ORYSJ Putative L-cysteine desulfhydrase 1	71.300%	Swiss-Prot	High
`Q5JNT6`	Oryza sativa subsp. japonica	sp\|Q5JNT6\|LCYD2_ORYSJ Putative L-cysteine desulfhydrase 2	66.300%	Swiss-Prot	High

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