TkA01G009050 | RubberDandelionOmics

Gene overview

TkA01G009050

Reference: TK1151 Chr: Chr01 Coordinates: 2430244-2437169 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1452 bp · TkA01G009050|TK1151|cDNA

ATGGCAGATATGGGATCTAATTTGTTCTTGTTGGGATATCATTTTCAAGTCATTGTAGGGGAGTGGTTGTCATCAAGAAGCAAAGCAACAGTCAAGAGCAAGCTCACCCGTATTCTTCAACCTGCACTTGGTAATGCAAAAATTTCCATCATTTGTACTGTGGCACCAAAAGAGGTTCATGTAGAGGAAACAAAGGGTACCCTTCAGTTTATCCGTAGAGCTAAACGTATCACCAACTATGTTCAAGTAAACGAGGAGAC...

CDS

Download CDS FASTA

1452 bp · TkA01G009050|TK1151|CDS

ATGGCAGATATGGGATCTAATTTGTTCTTGTTGGGATATCATTTTCAAGTCATTGTAGGGGAGTGGTTGTCATCAAGAAGCAAAGCAACAGTCAAGAGCAAGCTCACCCGTATTCTTCAACCTGCACTTGGTAATGCAAAAATTTCCATCATTTGTACTGTGGCACCAAAAGAGGTTCATGTAGAGGAAACAAAGGGTACCCTTCAGTTTATCCGTAGAGCTAAACGTATCACCAACTATGTTCAAGTAAACGAGGAGAC...

Protein

Download Protein FASTA

483 aa · TkA01G009050|TK1151|PROTEIN

MADMGSNLFLLGYHFQVIVGEWLSSRSKATVKSKLTRILQPALGNAKISIICTVAPKEVHVEETKGTLQFIRRAKRITNYVQVNEETMSKKIQVIVSIPQLLNQFQILLLLKDLIILGHLEYVYSRPLQDEFGDVADEDTWMVRAFTSFLLEQSFEEDDDKSPTSKLISTTNEVVKSIMSTFEADVSVAINGYRKRDNLEGEIGNSENCKNYKDCTLETQIASWKTNMSVENNHLIQASKARIHGLEKDPTEHIAQQQSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G009050`
TK1151 ID	TkA01G009050
OH-1004 ID	LXL04_023182
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	62.600
Protein coverage (%)	TK1151 44.928 / OH-1004 89.375 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G009050

Location Chr01:2430244-2437169 (-)

Description Similar to KIN7N: Kinesin-like protein KIN-7N

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g59540`	Kinesin-like protein KIN-7N.	No verified direct reference in this release
`UniProt: F4J2K4`	Kinesin-like protein KIN-7O.	No verified direct reference in this release
`At3g51150`	Kinesin-like protein KIN-7G.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0552600`	Kinesin-like protein KIN-7L.	No verified direct reference in this release
`Os09g0421200`	Kinesin-like protein KIN-7I.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023182 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000278 mitotic cell cycle Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0008608 attachment of spindle microtubules to kinetochore Biological Process

GO:0033044 regulation of chromosome organization Biological Process

GO:0042327 positive regulation of phosphorylation Biological Process

GO:0051301 cell division Biological Process

GO:0090307 mitotic spindle assembly Biological Process

GO:0140694 membraneless organelle assembly Biological Process

GO:1901987 regulation of cell cycle phase transition Biological Process

GO:0000775 chromosome, centromeric region Cellular Component

GO:0000776 kinetochore Cellular Component

KEGG gene cross-reference

ath:AT1G59540

ath:AT3G10180

ddi:DDB_G0285101

dosa:Os09g0421200

dosa:Os11g0552600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.430

Rank 1 · TkA01G009050 · TK1151

Cytoplasm0.397

Rank 2 · TkA01G009050 · TK1151

Mitochondrion0.153

Rank 3 · TkA01G009050 · TK1151

Cell membrane0.058

Rank 4 · TkA01G009050 · TK1151

Endoplasmic reticulum0.039

Rank 5 · TkA01G009050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07109Mg-por_mtran_C13-31 aa

PF00225Kinesin32-77 aa

PF07109Mg-por_mtran_C34-93 aa

PF00225Kinesin239-282 aa

PF07109Mg-por_mtran_C393-427 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G009050	`PF07109`	Mg-por_mtran_C	13	31	0.022	15.8
TkA01G009050	`PF00225`	Kinesin	32	77	1.2e-08	35.1
TkA01G009050	`PF07109`	Mg-por_mtran_C	34	93	0.022	15.8
TkA01G009050	`PF00225`	Kinesin	239	282	1.2e-08	35.1
TkA01G009050	`PF07109`	Mg-por_mtran_C	393	427	0.022	15.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S7P3`	Arabidopsis thaliana	sp\|Q9S7P3\|KN7N_ARATH Kinesin-like protein KIN-7N	77.800%	Swiss-Prot	Low
`F4J2K4`	Arabidopsis thaliana	sp\|F4J2K4\|KN7O_ARATH Kinesin-like protein KIN-7O	59.300%	Swiss-Prot	Low
`F4J394`	Arabidopsis thaliana	sp\|F4J394\|KN7G_ARATH Kinesin-like protein KIN-7G	58.500%	Swiss-Prot	Low
`Q2R2P7`	Oryza sativa subsp. japonica	sp\|Q2R2P7\|KN7L_ORYSJ Kinesin-like protein KIN-7L	75.900%	Swiss-Prot	Low
`B9G3M6`	Oryza sativa subsp. japonica	sp\|B9G3M6\|KN7I_ORYSJ Kinesin-like protein KIN-7I	61.100%	Swiss-Prot	Low

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