Gene Card
Gene overview
cDNA / CDS / Protein Sequences
4112 bp · TkA01G009030|TK1151|cDNA
ACGGCTTTGTCACTGTATAAACTATTATTCGTGACAGGAAAGACTAAAACATCGGTCAATTGTATGGAATACGGATGCATTACTAGCAAGAATAGGTATGATTAATTTTAAATACATTGGACGAAAGTGGAAGACTCTGAAATCAAACTTTTAAAGAATGTCCAGGAAGTGAATATCAATAATATTAGCCGGTGGTTTGAACTTGGATTTTTGCTGAAAAATCTGAAATCAATCGCAGACGTGGATAAAAGAAAGCAGCA...
3078 bp · TkA01G009030|TK1151|CDS
ATGGCATCTTCATCATCATCATCATCTTCTCTTCGTGTTTTTTCTTCTCAATCATGGAATTATGATGTTTTCCTTAGTTTTAGAGGAGCAGATACTCGCAAGACTTTTGTCGATCATCTCTACTCGGCTCTTGACCAAAATGGGATCCACACATACAAGGATGATGTTACACTTGAACGGGGGGAATCGATCAACCCAACTGTTTTGAAGGCTATTGAGGAATCTCAGATCGCAGTTATCGTATTTTCTAAAAACTATGC...
Protein
Download Protein FASTA1025 aa · TkA01G009030|TK1151|PROTEIN
MASSSSSSSSLRVFSSQSWNYDVFLSFRGADTRKTFVDHLYSALDQNGIHTYKDDVTLERGESINPTVLKAIEESQIAVIVFSKNYANSKWCLDELTHIMKLWKEGKQTVMPIFYDVEPTEVRHQKQTYGEAFDKHEGENPKTIKSWIRSFFIGLHRLVFTPQAQPRLENKEKVESWRKTLKEVSNISGWEIEQIANGHEAQGIKIIVDEISQRLVTSRENEDLVGMRTRVQGLKLKLQIEAGGVCMIGVWGVGGGGKTT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G009030 |
|---|---|
| TK1151 ID | TkA01G009030 |
| OH-1004 ID | LXL04_005900 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 78.900 |
| Protein coverage (%) | TK1151 99.415 / OH-1004 99.698Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G009030 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:2394791-2418085 (+) | |||||||||
| Description | Similar to ROQ1: Disease resistance protein Roq1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006952 defense response Biological Process GO:0007165 signal transduction Biological Process GO:0009626 plant-type hypersensitive response Biological Process GO:0010193 response to ozone Biological Process GO:0019677 NAD+ catabolic process Biological Process GO:0043068 positive regulation of programmed cell death Biological Process GO:0050832 defense response to fungus Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0003953 NAD+ nucleosidase activity Molecular Function GO:0005524 ATP binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G11170 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01582TIR20-149 aaPF26659PH_DUOX20-52 aaPF13676TIR_223-120 aaPF05729NACHT96-126 aaPF01582TIR168-221 aaPF01637ATPase_2201-225 aaPF00931NB-ARC236-397 aaPF13191AAA_16240-342 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G009030 | PF01582 | TIR | 20 | 149 | 2.3e-48 | 165.1 |
| TkA01G009030 | PF26659 | PH_DUOX | 20 | 52 | 0.15 | 12.4 |
| TkA01G009030 | PF13676 | TIR_2 | 23 | 120 | 5e-17 | 63.2 |
| TkA01G009030 | PF05729 | NACHT | 96 | 126 | 0.001 | 19.6 |
| TkA01G009030 | PF01582 | TIR | 168 | 221 | 2.3e-48 | 165.1 |
| TkA01G009030 | PF01637 | ATPase_2 | 201 | 225 | 0.0025 | 18.4 |
| TkA01G009030 | PF00931 | NB-ARC | 236 | 397 | 2.9e-19 | 70.0 |
| TkA01G009030 | PF13191 | AAA_16 | 240 | 342 | 0.024 | 15.9 |
| TkA01G009030 | PF01637 | ATPase_2 | 241 | 344 | 0.0025 | 18.4 |
| TkA01G009030 | PF05729 | NACHT | 250 | 397 | 0.001 | 19.6 |
| TkA01G009030 | PF00004 | AAA | 250 | 342 | 0.27 | 12.4 |
| TkA01G009030 | PF24883 | NPHP3_N | 252 | 307 | 0.081 | 13.8 |
| TkA01G009030 | PF23282 | WHD_ROQ1 | 468 | 537 | 6.4e-18 | 65.4 |
| TkA01G009030 | PF23952 | LRR_EndoS | 563 | 585 | 0.00038 | 21.4 |
| TkA01G009030 | PF23598 | LRR_14 | 574 | 652 | 0.0051 | 16.3 |
| TkA01G009030 | PF13855 | LRR_8 | 591 | 600 | 2.1e-05 | 24.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.