Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2019 bp · TkA01G007550|TK1151|cDNA
CAGGGTTATAGAGGGCATTGCTAGTCCGCTAATCATATCACCCTATGTCCTATATGTCCTTTGAAACCTTCTTGTAGGTCGATCTCTGAAACCAACAGCAATAACTTCTTCGGTTCTTCCTAATCGATTTCTCTGAAATCGCCATCAACCTCCCCTCTGAAATCGGCATCTGTAAAATCCAATTTCATCTCCATTAACGCCAATCGAAATCGAATTTGATGAAAGCAAAGTGTTTCTTGCCGTTTCTAGCTCTTGATGTA...
810 bp · TkA01G007550|TK1151|CDS
ATGTCAGCAATTGGGGGCACACTGCGATCCAAATTACGATTATCCATTTCCTCATTTCTCCACCACGACCTAATTCGAACCCCCATCTTCAAACACTACAGCTCTTCTTCCTACTCTTCTTCTTCTTCAATTACATCACCATTATCATTCAATCACACAACCAAAACCATCAGCGACATACTATACTCACAACACCCCCGCCATTACCACGATGGTAGACCCAGAGGATCTCTCTGGAGAGGAAAGAAAATGATCGGTAA...
Protein
Download Protein FASTA269 aa · TkA01G007550|TK1151|PROTEIN
MSAIGGTLRSKLRLSISSFLHHDLIRTPIFKHYSSSSYSSSSSITSPLSFNHTTKTISDILYSQHPRHYHDGRPRGSLWRGKKMIGKEALFVILGIKRVKHDEQKLENFIKIHVSRLLKIDMVAVLNELERQEEVDLAVKMFWVIQKQDWYTPDVYLYKDLIISLSKSKKMEEAMKLWESMKKENLYPDSQTYTEVIRGFLRFGSPGDAMNIYEDMKQSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEEIFPDQSIYD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G007550 |
|---|---|
| TK1151 ID | TkA01G007550 |
| OH-1004 ID | LXL04_006138 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 95.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G007550 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:1966554-1969521 (+) | |||||||||
| Description | Similar to THA8L: Protein THYLAKOID ASSEMBLY 8-like, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009555 pollen development Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0003727 single-stranded RNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:1990825 sequence-specific mRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G62350 ath:AT3G16710 ath:AT3G46870 ath:AT5G41170 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF23276TPR_24123-196 aaPF13041PPR_2125-142 aaPF13428TPR_14125-157 aaPF01535PPR129-142 aaPF12854PPR_1132-142 aaPF29070MSC6_N133-214 aaPF12854PPR_1152-182 aaPF13041PPR_2153-201 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G007550 | PF23276 | TPR_24 | 123 | 196 | 0.00064 | 20.4 |
| TkA01G007550 | PF13041 | PPR_2 | 125 | 142 | 7.7e-19 | 68.3 |
| TkA01G007550 | PF13428 | TPR_14 | 125 | 157 | 0.048 | 15.1 |
| TkA01G007550 | PF01535 | PPR | 129 | 142 | 1e-10 | 41.8 |
| TkA01G007550 | PF12854 | PPR_1 | 132 | 142 | 5.9e-06 | 26.6 |
| TkA01G007550 | PF29070 | MSC6_N | 133 | 214 | 2.9e-06 | 27.4 |
| TkA01G007550 | PF12854 | PPR_1 | 152 | 182 | 5.9e-06 | 26.6 |
| TkA01G007550 | PF13041 | PPR_2 | 153 | 201 | 7.7e-19 | 68.3 |
| TkA01G007550 | PF13812 | PPR_3 | 153 | 194 | 3.3e-06 | 27.8 |
| TkA01G007550 | PF01535 | PPR | 158 | 185 | 1e-10 | 41.8 |
| TkA01G007550 | PF13428 | TPR_14 | 159 | 189 | 0.048 | 15.1 |
| TkA01G007550 | PF17177 | PPR_long | 160 | 233 | 0.13 | 12.4 |
| TkA01G007550 | PF13812 | PPR_3 | 177 | 219 | 3.3e-06 | 27.8 |
| TkA01G007550 | PF12854 | PPR_1 | 185 | 217 | 5.9e-06 | 26.6 |
| TkA01G007550 | PF13041 | PPR_2 | 192 | 235 | 7.7e-19 | 68.3 |
| TkA01G007550 | PF01535 | PPR | 192 | 218 | 1e-10 | 41.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.