RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G007040
Reference: TK1151 Chr: Chr01 Coordinates: 1823925-1827727 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2520 bp · TkA01G007040|TK1151|cDNA

ATGGTTATGCCATTATTCTATAACGTGGAACCCACTGAAGTGCGTAAACAAACAGGAAAATACAAAGAAGCATTTGACAAACATGAGCTGGAGAACAAGAACACAATTCAATCTTGGGTACAAGCAGTTGTGAATGACCTTTGGAGATGTCTCTGTGTACCACTGGAAGAAAATCAGATATATAGAGAAGATGCTGCCAAACAGGAGTCGGAAAACAAGGCAAAGGTTGAATCTTGGAGAAAAGCACTTGTCGAAGCAAG...

CDS

Download CDS FASTA

2520 bp · TkA01G007040|TK1151|CDS

ATGGTTATGCCATTATTCTATAACGTGGAACCCACTGAAGTGCGTAAACAAACAGGAAAATACAAAGAAGCATTTGACAAACATGAGCTGGAGAACAAGAACACAATTCAATCTTGGGTACAAGCAGTTGTGAATGACCTTTGGAGATGTCTCTGTGTACCACTGGAAGAAAATCAGATATATAGAGAAGATGCTGCCAAACAGGAGTCGGAAAACAAGGCAAAGGTTGAATCTTGGAGAAAAGCACTTGTCGAAGCAAG...

Protein

Download Protein FASTA

839 aa · TkA01G007040|TK1151|PROTEIN

MVMPLFYNVEPTEVRKQTGKYKEAFDKHELENKNTIQSWVQAVVNDLWRCLCVPLEENQIYREDAAKQESENKAKVESWRKALVEASMKQRHVRWLLPSRKYPGGIKQEWFEKIISSALNLNQNQVREVAGVEEGRRMIKARLRHKKVLIVLDDVNRLDQLEALVGSRDWFGEGSRIIITTRDEHILVVHGVDVIHPISLLSNVEAVMLFHKHANGDRTTTKKFEKLSIEVTSYAGGLPLALKVLGCLLRGRNRILRISF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G007040
TK1151 IDTkA01G007040
OH-1004 IDLXL04_005923
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)63.200
Protein coverage (%)TK1151 100.000 / OH-1004 90.019
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G007040
LocationChr01:1823925-1827727 (+)
DescriptionSimilar to ROQ1: Disease resistance protein Roq1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g16950 TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Hyaloperonospora arabidopsis isolate Noco2 (downy mildew disease). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005923 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0010193 response to ozone Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT4G11170
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.334
Rank 1 · TkA01G007040 · TK1151
Cytoplasm0.301
Rank 2 · TkA01G007040 · TK1151
Nucleus0.294
Rank 3 · TkA01G007040 · TK1151
Endoplasmic reticulum0.128
Rank 4 · TkA01G007040 · TK1151
Extracellular0.063
Rank 5 · TkA01G007040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR1-43 aa
PF23952LRR_EndoS13-29 aa
PF01582TIR68-88 aa
PF00931NB-ARC95-215 aa
PF13855LRR_8106-127 aa
PF23952LRR_EndoS117-150 aa
PF12799LRR_4119-129 aa
PF00560LRR_1119-126 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G007040PF01582TIR1434.8e-0833.7
TkA01G007040PF23952LRR_EndoS13290.7310.8
TkA01G007040PF01582TIR68884.8e-0833.7
TkA01G007040PF00931NB-ARC952152.6e-1040.8
TkA01G007040PF13855LRR_81061275.9e-0523.5
TkA01G007040PF23952LRR_EndoS1171500.7310.8
TkA01G007040PF12799LRR_41191292.2e-0731.6
TkA01G007040PF00560LRR_11191262.59.3
TkA01G007040PF25019LRR_R13L1-DRL211251520.6210.7
TkA01G007040PF23282WHD_ROQ12653343.5e-1556.6
TkA01G007040PF13855LRR_83894025.9e-0523.5
TkA01G007040PF12799LRR_43924012.2e-0731.6
TkA01G007040PF00560LRR_13924032.59.3
TkA01G007040PF12799LRR_44344622.2e-0731.6
TkA01G007040PF25019LRR_R13L1-DRL214414690.6210.7
TkA01G007040PF00560LRR_14444642.59.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JNB7Arabidopsis thalianasp|F4JNB7|RPP5_ARATH Disease resistance protein RPP529.000%Swiss-ProtLow

JBrowse

View in Genome Browser