TkA01G006880 | RubberDandelionOmics

Gene overview

TkA01G006880

Reference: TK1151 Chr: Chr01 Coordinates: 1778158-1778826 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

669 bp · TkA01G006880|TK1151|cDNA

CGAAAGCCAAATGAGCCATGGTTGGATTGGCCCAACTCGACTAAACATAATCAAAGGTGTAGCCAAGGGCTCGACTATCTCTACGAGAAGCTTCCTCACTTATCATTACCACATGGTCACCTAAAATCATCCAACGTGCTTCTCGATAGCACCTTCAACCCTCTACTAGCAGATTATGGTCTAATTCCAGTTATCAACAAGCACCACGGTCAAGAGTTCATGGTGGCCTACAAGTCGCCGGAGTTCACCCACCATGATCG...

CDS

Download CDS FASTA

669 bp · TkA01G006880|TK1151|CDS

CGAAAGCCAAATGAGCCATGGTTGGATTGGCCCAACTCGACTAAACATAATCAAAGGTGTAGCCAAGGGCTCGACTATCTCTACGAGAAGCTTCCTCACTTATCATTACCACATGGTCACCTAAAATCATCCAACGTGCTTCTCGATAGCACCTTCAACCCTCTACTAGCAGATTATGGTCTAATTCCAGTTATCAACAAGCACCACGGTCAAGAGTTCATGGTGGCCTACAAGTCGCCGGAGTTCACCCACCATGATCG...

Protein

Download Protein FASTA

222 aa · TkA01G006880|TK1151|PROTEIN

RKPNEPWLDWPNSTKHNQRCSQGLDYLYEKLPHLSLPHGHLKSSNVLLDSTFNPLLADYGLIPVINKHHGQEFMVAYKSPEFTHHDRTTVKTDVWCLGILILEVLTGKFPANYLKQGKGGSSDLETWVNSVVREEWTGEVFDKDMKGTKNSEGEMLKLLKIGICVVNGILRGGGIEGGKVELKIGELKERGTDEEYLSCASDGDAYSSRATTDDDFSFSVSN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G006880`
TK1151 ID	TkA01G006880
OH-1004 ID	LXL04_029043
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	66.500
Protein coverage (%)	TK1151 99.099 / OH-1004 25.524 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G006880

Location Chr01:1778158-1778826 (+)

Description Similar to At4g31250: Probable LRR receptor-like serine/threonine-protein kinase At4g31250

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31250`	Probable LRR receptor-like serine/threonine-protein kinase At4g31250.	No verified direct reference in this release
`At3g20190`	Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth.	No verified direct reference in this release
`At1g50610`	Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth.	GRIM REAPER peptide binds to receptor kinase PRK5 to trigger cell death in Arabidopsis.2015 · DOI: 10.15252/embj.201488582
`At5g35390`	Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth.	AtPRK2 promotes ROP1 activation via RopGEFs in the control of polarized pollen tube growth.2013 · DOI: 10.1093/mp/sss103
`At2g07040`	Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth.	A distinct mechanism regulating a pollen-specific guanine nucleotide exchange factor for the small GTPase Rop in Arabidopsis thaliana.2007 · DOI: 10.1073/pnas.0705874104 AtPRK2 promotes ROP1 activation via RopGEFs in the control of polarized pollen tube growth.2013 · DOI: 10.1093/mp/sss103 The juxtamembrane and carboxy-terminal domains of Arabidopsis PRK2 are critical for ROP-induced growth in pollen tubes.2013 · DOI: 10.1093/jxb/ert323

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029043 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0080092 regulation of pollen tube growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0045177 apical part of cell Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G50610

ath:AT2G07040

ath:AT3G20190

ath:AT4G31250

ath:AT5G35390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.437

Rank 1 · TkA01G006880 · TK1151

Nucleus0.387

Rank 2 · TkA01G006880 · TK1151

Cell membrane0.248

Rank 3 · TkA01G006880 · TK1151

Endoplasmic reticulum0.055

Rank 4 · TkA01G006880 · TK1151

Lysosome / Vacuole0.029

Rank 5 · TkA01G006880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr13-114 aa

PF00069Pkinase20-126 aa

PF14531Kinase-like29-117 aa

PF14604SH3_993-115 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G006880	`PF07714`	PK_Tyr_Ser-Thr	13	114	2.7e-12	47.3
TkA01G006880	`PF00069`	Pkinase	20	126	1.6e-13	51.4
TkA01G006880	`PF14531`	Kinase-like	29	117	0.00011	22.3
TkA01G006880	`PF14604`	SH3_9	93	115	0.054	14.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`C0LGR9`	Arabidopsis thaliana	sp\|C0LGR9\|Y4312_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g31250	52.200%	Swiss-Prot	High
`Q9LJY0`	Arabidopsis thaliana	sp\|Q9LJY0\|PRK4_ARATH Pollen receptor-like kinase 4	48.200%	Swiss-Prot	Medium
`Q9LPT1`	Arabidopsis thaliana	sp\|Q9LPT1\|PRK5_ARATH Pollen receptor-like kinase 5	46.000%	Swiss-Prot	Medium
`C0LGU0`	Arabidopsis thaliana	sp\|C0LGU0\|PRK1_ARATH Pollen receptor-like kinase 1	48.400%	Swiss-Prot	Medium
`Q84JQ4`	Arabidopsis thaliana	sp\|Q84JQ4\|PRK2_ARATH Pollen receptor-like kinase 2	45.200%	Swiss-Prot	Medium

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