TkA01G005780 | RubberDandelionOmics

Gene overview

TkA01G005780

Reference: TK1151 Chr: Chr01 Coordinates: 1436525-1438689 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1308 bp · TkA01G005780|TK1151|cDNA

ATGATCTCTAAAACATCCCACGACAACGAGAGTTCCAAACTAGAGTTTGAAGAGATGGTTAAGGCTGCATTCAGAACAAAGGAACTAGAGATGCTTCTCTTCATAAGACTCCACAACAAAGAGATTTCTGAAAGGGAGTTTAAAGAGATGGTTGAGGCCGTGGTCAGCAAAGGGGAACAAGAGATGCTTCTCTTCAAGAGATCCCACAACAAAGAAACTTCAGTTCGGGAGTTTAAAGAGATAATGGTTAAATCAGAAAG...

CDS

Download CDS FASTA

1308 bp · TkA01G005780|TK1151|CDS

ATGATCTCTAAAACATCCCACGACAACGAGAGTTCCAAACTAGAGTTTGAAGAGATGGTTAAGGCTGCATTCAGAACAAAGGAACTAGAGATGCTTCTCTTCATAAGACTCCACAACAAAGAGATTTCTGAAAGGGAGTTTAAAGAGATGGTTGAGGCCGTGGTCAGCAAAGGGGAACAAGAGATGCTTCTCTTCAAGAGATCCCACAACAAAGAAACTTCAGTTCGGGAGTTTAAAGAGATAATGGTTAAATCAGAAAG...

Protein

Download Protein FASTA

435 aa · TkA01G005780|TK1151|PROTEIN

MISKTSHDNESSKLEFEEMVKAAFRTKELEMLLFIRLHNKEISEREFKEMVEAVVSKGEQEMLLFKRSHNKETSVREFKEIMVKSEREFEEMVESVWFSLNKDGELREMISGEHCCHSISHNVGTTTVNLKSRDSKSPNKDFYIWSSKHMRVQLLSPGITYTVNLVFKLQQTTKMYNYLQYKFAGESEFSTSFISNEREYGWMTTDKLCHFISTNENVDLDIIYVGCEDAMLIEGIEIRSLDRDEQVLEEEEVDITHPDT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G005780`
TK1151 ID	TkA01G005780
OH-1004 ID	LXL04_011396
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	48.900
Protein coverage (%)	TK1151 76.322 / OH-1004 42.538 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G005780`
Location	Chr01:1436525-1438689 (-)
Description	Similar to At5g38990: Probable receptor-like protein kinase At5g38990
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_011396` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009723 response to ethylene Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0009741 response to brassinosteroid Biological Process GO:0009742 brassinosteroid mediated signaling pathway Biological Process GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process GO:0009791 post-embryonic development Biological Process GO:0009826 unidimensional cell growth Biological Process GO:0009873 ethylene-activated signaling pathway Biological Process GO:0010038 response to metal ion Biological Process GO:0010118 stomatal movement Biological Process GO:0010483 pollen tube reception Biological Process GO:0030308 negative regulation of cell growth Biological Process
KEGG gene cross-reference	ath:AT1G30570 ath:AT3G51550 ath:AT5G28680 ath:AT5G38990 ath:AT5G39000 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.561

Rank 1 · TkA01G005780 · TK1151

Nucleus0.424

Rank 2 · TkA01G005780 · TK1151

Cell membrane0.115

Rank 3 · TkA01G005780 · TK1151

Endoplasmic reticulum0.068

Rank 4 · TkA01G005780 · TK1151

Extracellular0.045

Rank 5 · TkA01G005780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16872putAbiC2-39 aa

PF27320YurS_helical12-21 aa

PF09344Cas_CT197516-96 aa

PF08985DP-EP20-78 aa

PF27320YurS_helical37-54 aa

PF16872putAbiC38-83 aa

PF14299PP241-74 aa

PF27320YurS_helical85-94 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G005780	`PF16872`	putAbiC	2	39	0.0012	20.0
TkA01G005780	`PF27320`	YurS_helical	12	21	1.6	9.7
TkA01G005780	`PF09344`	Cas_CT1975	16	96	0.38	10.9
TkA01G005780	`PF08985`	DP-EP	20	78	0.43	11.7
TkA01G005780	`PF27320`	YurS_helical	37	54	1.6	9.7
TkA01G005780	`PF16872`	putAbiC	38	83	0.0012	20.0
TkA01G005780	`PF14299`	PP2	41	74	2e-11	44.8
TkA01G005780	`PF27320`	YurS_helical	85	94	1.6	9.7
TkA01G005780	`PF14299`	PP2	150	239	2e-11	44.8
TkA01G005780	`PF08985`	DP-EP	157	202	0.43	11.7
TkA01G005780	`PF08985`	DP-EP	250	260	0.43	11.7
TkA01G005780	`PF14299`	PP2	347	428	2e-11	44.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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