TkA01G003700 | RubberDandelionOmics

Gene overview

TkA01G003700

Reference: TK1151 Chr: Chr01 Coordinates: 979836-981193 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

713 bp · TkA01G003700|TK1151|cDNA

GACACCGGCTCCTTATTAAAGTCTCAAACACATTCGTAGTGCTTCCCTCCATTTCCATCAGGGTCTAGGGTTTTTCTAGAGGAGTGTTTTGAGAAGGTCAATAAATTTTGCTAGCAAACGCCCAAAAATGGCGTGGTCGATTCGCGCTTTTGCTCAAGGTTACAGAGTTTTGATGGCGGCTGCCAACAGCGCCACCACCGCCACCGCCGTTGCACCCAAGCGTGGCCGCCCCGCCGGTATTCTCAAAGTAGTTCCAGTAT...

CDS

Download CDS FASTA

354 bp · TkA01G003700|TK1151|CDS

ATGGCGTGGTCGATTCGCGCTTTTGCTCAAGGTTACAGAGTTTTGATGGCGGCTGCCAACAGCGCCACCACCGCCACCGCCGTTGCACCCAAGCGTGGCCGCCCCGCCGGTATTCTCAAAGTAGTTCCAGTATCACAATCTCTTGGTGAGTTCCTCGGCGTATCTGAAGCCTCTCGAACCGACGCAGTGAAGAAAGTATGGGGATACATCAAGGACAATAACCTCCAGAACCCTTTAAACAAGAAGGAGATCCTGTGTGA...

Protein

Download Protein FASTA

117 aa · TkA01G003700|TK1151|PROTEIN

MAWSIRAFAQGYRVLMAAANSATTATAVAPKRGRPAGILKVVPVSQSLGEFLGVSEASRTDAVKKVWGYIKDNNLQNPLNKKEILCDAKLKSIFNGKDQVGFLEIAKLLSQHFVKST

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G003700`
TK1151 ID	TkA01G003700
OH-1004 ID	LXL04_005972
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G003700`
Location	Chr01:979836-981193 (-)
Description	Similar to UAF30: Upstream activation factor subunit UAF30 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005972` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006325 chromatin organization Biological Process GO:0006361 transcription initiation at RNA polymerase I promoter Biological Process GO:0042790 nucleolar large rRNA transcription by RNA polymerase I Biological Process GO:0045943 positive regulation of transcription by RNA polymerase I Biological Process GO:0000500 RNA polymerase I upstream activating factor complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0001165 RNA polymerase I cis-regulatory region sequence-specific DNA binding Molecular Function GO:0001181 RNA polymerase I general transcription initiation factor activity Molecular Function GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference	sce:YMR233W sce:YOR295W spo:2539310 vg:4156281 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.809

Rank 1 · TkA01G003700 · TK1151

Plastid0.135

Rank 2 · TkA01G003700 · TK1151

Nucleus0.048

Rank 3 · TkA01G003700 · TK1151

Cytoplasm0.042

Rank 4 · TkA01G003700 · TK1151

Extracellular0.009

Rank 5 · TkA01G003700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03656Pam166-71 aa

PF02201SWIB41-113 aa

PF26291SWIB_eIF2D64-104 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G003700	`PF03656`	Pam16	6	71	0.039	14.7
TkA01G003700	`PF02201`	SWIB	41	113	4.5e-30	103.9
TkA01G003700	`PF26291`	SWIB_eIF2D	64	104	0.00087	19.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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