TkA01G002710 | RubberDandelionOmics

Gene overview

TkA01G002710

Reference: TK1151 Chr: Chr01 Coordinates: 703419-706195 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1137 bp · TkA01G002710|TK1151|cDNA

ATGGAGAAGGCAGGCGCCGATATGGAGGATGGCGATGGATGCAAGCAGCAGAGAAAAACGGAGGTTGAAGCAGCATCGACTGAAGTTTGGTTGTCGATTGTGGTGTTGGTGACCGATGTAGTTGGCAACCATATTTGTGGTTTTCGGTTGATATTCACCGTTCTACTTCCACAATCACGTCGCGCAACCGCGAGAAAAGATGGTCCTGGCGGAACAGGAAAAACATATTTGTACAAAGCATTACTAGCTAATGTTCGCAA...

CDS

Download CDS FASTA

1137 bp · TkA01G002710|TK1151|CDS

ATGGAGAAGGCAGGCGCCGATATGGAGGATGGCGATGGATGCAAGCAGCAGAGAAAAACGGAGGTTGAAGCAGCATCGACTGAAGTTTGGTTGTCGATTGTGGTGTTGGTGACCGATGTAGTTGGCAACCATATTTGTGGTTTTCGGTTGATATTCACCGTTCTACTTCCACAATCACGTCGCGCAACCGCGAGAAAAGATGGTCCTGGCGGAACAGGAAAAACATATTTGTACAAAGCATTACTAGCTAATGTTCGCAA...

Protein

Download Protein FASTA

378 aa · TkA01G002710|TK1151|PROTEIN

MEKAGADMEDGDGCKQQRKTEVEAASTEVWLSIVVLVTDVVGNHICGFRLIFTVLLPQSRRATARKDGPGGTGKTYLYKALLANVRKCGHIALATASSGVAANNMPGGRTAHSRFKIPINLENNSACNVKKQSGTAQLLRIAKLIIWDEASMAKRQAVEAFDRTMQDIIGVTLPFGGKIMVMGGDFRQVLPVTDPWFSDFLLRVGDGVEGTEDGSLIRIPDDRVIPYNDNSISLDALIDAIFPTLDVNMSRSDYIISRAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G002710`
TK1151 ID	TkA01G002710
OH-1004 ID	LXL04_005996
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 99.735 / OH-1004 58.089 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G002710`
Location	Chr01:703419-706195 (-)
Description	Similar to UEV1D: Ubiquitin-conjugating enzyme E2 variant 1D
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005996` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000723 telomere maintenance Biological Process GO:0006281 DNA repair Biological Process GO:0006301 DNA damage tolerance Biological Process GO:0006310 DNA recombination Biological Process GO:0006974 DNA damage response Biological Process GO:0070534 protein K63-linked ubiquitination Biological Process GO:1902916 positive regulation of protein polyubiquitination Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005829 cytosol Cellular Component
KEGG gene cross-reference	ath:AT1G23260 ath:AT1G70660 ath:AT2G36060 ath:AT3G52560 xla:734585 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.580

Rank 1 · TkA01G002710 · TK1151

Cytoplasm0.409

Rank 2 · TkA01G002710 · TK1151

Mitochondrion0.046

Rank 3 · TkA01G002710 · TK1151

Peroxisome0.040

Rank 4 · TkA01G002710 · TK1151

Cell membrane0.031

Rank 5 · TkA01G002710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13604AAA_3059-164 aa

PF05970PIF167-193 aa

PF13245AAA_1968-163 aa

PF05970PIF1197-208 aa

PF21530Pif1_2B_dom303-346 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G002710	`PF13604`	AAA_30	59	164	5.3e-06	27.0
TkA01G002710	`PF05970`	PIF1	67	193	6.8e-50	170.4
TkA01G002710	`PF13245`	AAA_19	68	163	0.0015	19.4
TkA01G002710	`PF05970`	PIF1	197	208	6.8e-50	170.4
TkA01G002710	`PF21530`	Pif1_2B_dom	303	346	1.8e-18	66.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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