LXL04_040237 | RubberDandelionOmics

Gene overview

LXL04_040237

Reference: OH-1004 Chr: JAJTUU010000677.1 Coordinates: 18194-25893 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3279 bp · LXL04_040237|LXL04_040237|OH1004|cDNA

atggaccgcttaaataccaagtctttcctagacagaacctacccaacataTGATACTCTAAAATTACATCAGCAATATCTATTTATGTCGACGCAGTTAAATGCAGAACAGAAAAAAGTTTTTGATCAGATTCATCTTTCTGCTACTTCTGGTATTCAATCTTTGATTTTTGTGTATGGTTATGGTGGCACAGGCAAGACTTTTTTATGGTCGACTATACTGGCTTACTTAAGATCCAGAGGTTTGATTGTACTTGCTGT...

CDS

Download CDS FASTA

3279 bp · LXL04_040237|LXL04_040237|OH1004|CDS

ATGGACCGCTTAAATACCAAGTCTTTCCTAGACAGAACCTACCCAACATATGATACTCTAAAATTACATCAGCAATATCTATTTATGTCGACGCAGTTAAATGCAGAACAGAAAAAAGTTTTTGATCAGATTCATCTTTCTGCTACTTCTGGTATTCAATCTTTGATTTTTGTGTATGGTTATGGTGGCACAGGCAAGACTTTTTTATGGTCGACTATACTGGCTTACTTAAGATCCAGAGGTTTGATTGTACTTGCTGT...

Protein

Download Protein FASTA

1092 aa · LXL04_040237|LXL04_040237|OH1004|PROTEIN

MDRLNTKSFLDRTYPTYDTLKLHQQYLFMSTQLNAEQKKVFDQIHLSATSGIQSLIFVYGYGGTGKTFLWSTILAYLRSRGLIVLAVAASGIASLLLPAGRTAHSRLKIPLDLSDSSTCHIKKKTHLGQLLQETFAIVWDEATMNERKCFECVDRSLKDILDKPNLPFGGMTMLVGGDFRQTLPVKPKLKPAEVVGCTLPNSPLWRYFTVYPLLYNMRLSCSNDNGSVFAAKQAFASWLIDIGNGIVGIPSLEDPENISD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_040237`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_040237`
Location	JAJTUU010000677.1:18194-25893 (+)
Description	Similar to PIF1: ATP-dependent DNA helicase PIF1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_040237` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000723 telomere maintenance Biological Process GO:0001117 protein-DNA-RNA complex disassembly Biological Process GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0007004 telomere maintenance via telomerase Biological Process GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process GO:0051276 chromosome organization Biological Process GO:0000781 chromosome, telomeric region Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference	hsa:80119 prw:PsycPRwf_1560 tbr:Tb11.01.6420 tbr:Tb11.02.4730 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.682

Rank 1 · LXL04_040237 · OH-1004

Cytoplasm0.319

Rank 2 · LXL04_040237 · OH-1004

Mitochondrion0.041

Rank 3 · LXL04_040237 · OH-1004

Cell membrane0.036

Rank 4 · LXL04_040237 · OH-1004

Endoplasmic reticulum0.028

Rank 5 · LXL04_040237 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05970.21PIF132-246 aa

PF21530.4Pif1_2B_dom351-394 aa

PF08646.17Rep_fac-A_C707-816 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_040237	`PF05970.21`	PIF1	32	246	2e-73	247.4
LXL04_040237	`PF21530.4`	Pif1_2B_dom	351	394	1.5e-13	50.9
LXL04_040237	`PF08646.17`	Rep_fac-A_C	707	816	3e-06	27.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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