LXL04_039907 | RubberDandelionOmics

Gene overview

LXL04_039907

Reference: OH-1004 Chr: JAJTUU010000082.1 Coordinates: 17445-19690 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

699 bp · LXL04_039907|LXL04_039907|OH1004|cDNA

ATGAACAAGATTGAAAGAGCGCATCAGATGTACAGAGATGGGAAGTATGAAGAAGCGCTTGAATTTTATACAGAAGCACTTTCGATTGCCAAAACCAATCCTCAAAAGATCGCCCTTCATAGCAATCGAGCCGCCTGTTTTCTAAAACTCCACCACTTTAAAAAGgCAGCAGAGGAATGTACTTCGGTACTTGAGCTTGATCATGAGCATACAGGAGCCTTAATGTTGCGGGCCCAAACTTTAGTCACACTTAAAGAATA...

CDS

Download CDS FASTA

699 bp · LXL04_039907|LXL04_039907|OH1004|CDS

ATGAACAAGATTGAAAGAGCGCATCAGATGTACAGAGATGGGAAGTATGAAGAAGCGCTTGAATTTTATACAGAAGCACTTTCGATTGCCAAAACCAATCCTCAAAAGATCGCCCTTCATAGCAATCGAGCCGCCTGTTTTCTAAAACTCCACCACTTTAAAAAGGCAGCAGAGGAATGTACTTCGGTACTTGAGCTTGATCATGAGCATACAGGAGCCTTAATGTTGCGGGCCCAAACTTTAGTCACACTTAAAGAATA...

Protein

Download Protein FASTA

232 aa · LXL04_039907|LXL04_039907|OH1004|PROTEIN

MNKIERAHQMYRDGKYEEALEFYTEALSIAKTNPQKIALHSNRAACFLKLHHFKKAAEECTSVLELDHEHTGALMLRAQTLVTLKEYHSALFDVNRLIDLNPDSEVYQNLEARLKTQLSLAPIPELEEEEEEEEEDDDEESNLVNLAESDNDDNKEPEVSVPENVEITITPPHTQTLKEEPIPKPKGHSRLDYSRWDKVEDDSSEEDEDDDDEDSRPQYRFRVKNIGVRSVK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039907`
TK1151 ID	TkA04G253630
OH-1004 ID	LXL04_039907
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	84.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_039907`
Location	JAJTUU010000082.1:17445-19690 (+)
Description	Similar to Unc45a: Protein unc-45 homolog A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_039907` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006457 protein folding Biological Process GO:0007338 single fertilization Biological Process GO:0030154 cell differentiation Biological Process GO:0050821 protein stabilization Biological Process GO:0070286 axonemal dynein complex assembly Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0016607 nuclear speck Cellular Component GO:0048471 perinuclear region of cytoplasm Cellular Component GO:0120293 dynein axonemal particle Cellular Component
KEGG gene cross-reference	hsa:55898 hsa:6674 mmu:101869 pon:100174449 rno:308759 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.631

Rank 1 · LXL04_039907 · OH-1004

Nucleus0.336

Rank 2 · LXL04_039907 · OH-1004

Mitochondrion0.103

Rank 3 · LXL04_039907 · OH-1004

Cell membrane0.073

Rank 4 · LXL04_039907 · OH-1004

Golgi apparatus0.063

Rank 5 · LXL04_039907 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07719.24TPR_25-33 aa

PF13424.13TPR_127-58 aa

PF12895.14ANAPC314-91 aa

PF14559.13TPR_1950-114 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039907	`PF07719.24`	TPR_2	5	33	6.3e-14	51.6
LXL04_039907	`PF13424.13`	TPR_12	7	58	2.9e-06	28.1
LXL04_039907	`PF12895.14`	ANAPC3	14	91	2.2e-06	28.6
LXL04_039907	`PF14559.13`	TPR_19	50	114	9.5e-09	36.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card