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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_039545
Reference: OH-1004 Chr: JAJTUU010000013.1 Coordinates: 678250-679842 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1593 bp · LXL04_039545|LXL04_039545|OH1004|cDNA

ATGCAAACCAGAATTTGGTCCCTGAAATGTCTTTTCTGTGGAAATCTTCGAGTACTTTACAAACCCAGAGCTCAAACTCTCATCCAATTCAAGCATATTGCATCTCTGATCCTCAATAAGCATGAAtcatcatcaaattttcgaACTTTTCACAACGAAAGTCATGAACATCCAGAGTCTTGTAGCGAAGGAAATCACGGATTTCTCCCATCGCCGGTACCAAGCAAGGATGAATCCTCCGCCATGGATAGCAAAGCCCT...

CDS

Download CDS FASTA

1593 bp · LXL04_039545|LXL04_039545|OH1004|CDS

ATGCAAACCAGAATTTGGTCCCTGAAATGTCTTTTCTGTGGAAATCTTCGAGTACTTTACAAACCCAGAGCTCAAACTCTCATCCAATTCAAGCATATTGCATCTCTGATCCTCAATAAGCATGAATCATCATCAAATTTTCGAACTTTTCACAACGAAAGTCATGAACATCCAGAGTCTTGTAGCGAAGGAAATCACGGATTTCTCCCATCGCCGGTACCAAGCAAGGATGAATCCTCCGCCATGGATAGCAAAGCCCT...

Protein

Download Protein FASTA

530 aa · LXL04_039545|LXL04_039545|OH1004|PROTEIN

MQTRIWSLKCLFCGNLRVLYKPRAQTLIQFKHIASLILNKHESSSNFRTFHNESHEHPESCSEGNHGFLPSPVPSKDESSAMDSKALEVQALLKQINGHHEIEQALTLLGLSVNEDLVLNILRRHRSDWKSAYLFFTWVSNSSGYSPGTGSYNEILDILGRFKRFTEVSQLLDEMSNKNNNLINERTYGVVVNRYAAAHKIEDAIDFFYKRKQFGLKLDLIAFQTLLLSLCRYKHVEAAEFLFHSKKHEFPHTIKTMNII...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_039545
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_039545
LocationJAJTUU010000013.1:678250-679842 (+)
DescriptionSimilar to At3g15200: Putative pentatricopeptide repeat-containing protein At3g15200
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g15200 Putative pentatricopeptide repeat-containing protein At3g15200. No verified direct reference in this release
At5g15010 Pentatricopeptide repeat-containing protein At5g15010, mitochondrial. No verified direct reference in this release
At1g80550 Pentatricopeptide repeat-containing protein At1g80550, mitochondrial. No verified direct reference in this release
At3g62470 Pentatricopeptide repeat-containing protein At3g62470, mitochondrial. No verified direct reference in this release
At3g62540 Pentatricopeptide repeat-containing protein At3g62540, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039545 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0022626 cytosolic ribosome Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G80550
ath:AT3G15200
ath:AT3G62470
ath:AT5G15010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.849
Rank 1 · LXL04_039545 · OH-1004
Plastid0.073
Rank 2 · LXL04_039545 · OH-1004
Nucleus0.068
Rank 3 · LXL04_039545 · OH-1004
Cytoplasm0.032
Rank 4 · LXL04_039545 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_039545 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N152-311 aa
PF13041.13PPR_2254-300 aa
PF12854.14PPR_1285-315 aa
PF01535.27PPR290-320 aa
PF17177.11PPR_long291-451 aa
PF13812.13PPR_3311-368 aa
PF12854.14PPR_1318-350 aa
PF13041.13PPR_2322-371 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_039545PF29070.1MSC6_N1523112.6e-2383.5
LXL04_039545PF13041.13PPR_22543003.5e-55184.6
LXL04_039545PF12854.14PPR_12853158.4e-37125.3
LXL04_039545PF01535.27PPR2903203.3e-39131.1
LXL04_039545PF17177.11PPR_long2914512.9e-1660.2
LXL04_039545PF13812.13PPR_33113683.6e-2691.7
LXL04_039545PF12854.14PPR_13183508.4e-37125.3
LXL04_039545PF13041.13PPR_23223713.5e-55184.6
LXL04_039545PF23276.3TPR_243293892.9e-1247.3
LXL04_039545PF29070.1MSC6_N3304112.6e-2383.5
LXL04_039545PF13812.13PPR_33464093.6e-2691.7
LXL04_039545PF12854.14PPR_13533868.4e-37125.3
LXL04_039545PF13041.13PPR_23574093.5e-55184.6
LXL04_039545PF01535.27PPR3603893.3e-39131.1
LXL04_039545PF13812.13PPR_34194633.6e-2691.7
LXL04_039545PF13041.13PPR_24354773.5e-55184.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LIL5Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At3g1520045.842%Swiss-Protmoderate database homology
Q9LFQ4Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g15010, mitochondrial33.981%Swiss-Protmoderate database homology
Q9M8M3Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g80550, mitochondrial31.358%Swiss-Protmoderate database homology
Q9LZP3Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g62470, mitochondrial30.500%Swiss-Protmoderate database homology
Q3EAF8Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g62540, mitochondrial30.500%Swiss-Protmoderate database homology

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