LXL04_039510 | RubberDandelionOmics

Gene overview

LXL04_039510

Reference: OH-1004 Chr: JAJTUU010000012.1 Coordinates: 1255307-1266968 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2889 bp · LXL04_039510|LXL04_039510|OH1004|cDNA

ATGATATCCTGGATGTGGCTATGGTTGACGATCGTCGCCGCCGTAGCTCAAGCTCAAACCACCACCACCGATCCAGCTGAAGCGCGAGTTATACATGAAATGTTCAGTCAATGGGGGATAGCGGAAACTGCAGCAACAACGAGGGGGTGGAATCTAAGCGGAGATCCATGCACCGTCACCGCTGTGGATGACTCTACCAATTTCAATGACGGTAATTTCAATCCCGGCATCAAATGCGACTGTAGTTTCCCCAATTCTAC...

CDS

Download CDS FASTA

2889 bp · LXL04_039510|LXL04_039510|OH1004|CDS

ATGATATCCTGGATGTGGCTATGGTTGACGATCGTCGCCGCCGTAGCTCAAGCTCAAACCACCACCACCGATCCAGCTGAAGCGCGAGTTATACATGAAATGTTCAGTCAATGGGGGATAGCGGAAACTGCAGCAACAACGAGGGGGTGGAATCTAAGCGGAGATCCATGCACCGTCACCGCTGTGGATGACTCTACCAATTTCAATGACGGTAATTTCAATCCCGGCATCAAATGCGACTGTAGTTTCCCCAATTCTAC...

Protein

Download Protein FASTA

962 aa · LXL04_039510|LXL04_039510|OH1004|PROTEIN

MISWMWLWLTIVAAVAQAQTTTTDPAEARVIHEMFSQWGIAETAATTRGWNLSGDPCTVTAVDDSTNFNDGNFNPGIKCDCSFPNSTCHITALGTIPEGLWTLSNLTILNLAQNYLTEPSASIHYQGQFPPEIGQLTELRLLSFSGNNFSGSLPPEIGNLRRLEQIYIDSAGVSGAIPSTFSNLQNLQTGWASDNEFTGRLPDFIGNWSQLQTLRFEGNSFEGSIPPSFSRLTSMLELRISGLSNGTLDFIRDMKSLSVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039510`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_039510

Location JAJTUU010000012.1:1255307-1266968 (-)

Description Similar to At1g56140: Probable LRR receptor-like serine/threonine-protein kinase At1g56140

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g56140`	Probable LRR receptor-like serine/threonine-protein kinase At1g56140.	No verified direct reference in this release
`At1g56130`	Probable LRR receptor-like serine/threonine-protein kinase At1g56130.	No verified direct reference in this release
`At1g53430`	Probable LRR receptor-like serine/threonine-protein kinase At1g53430.	No verified direct reference in this release
`At1g53440`	Probable LRR receptor-like serine/threonine-protein kinase At1g53440.	No verified direct reference in this release
`At1g07650`	Probable LRR receptor-like serine/threonine-protein kinase At1g07650.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039510 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0031667 response to nutrient levels Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0033612 receptor serine/threonine kinase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G07650

ath:AT1G53430

ath:AT1G53440

ath:AT1G56130

ath:AT1G56140

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.781

Rank 1 · LXL04_039510 · OH-1004

Endoplasmic reticulum0.092

Rank 2 · LXL04_039510 · OH-1004

Cytoplasm0.080

Rank 3 · LXL04_039510 · OH-1004

Nucleus0.051

Rank 4 · LXL04_039510 · OH-1004

Lysosome / Vacuole0.047

Rank 5 · LXL04_039510 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598.2LRR_14127-188 aa

PF23598.2LRR_14199-281 aa

PF11721.15Malectin361-542 aa

PF00069.32Pkinase630-836 aa

PF07714.24PK_Tyr_Ser-Thr632-895 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039510	`PF23598.2`	LRR_14	127	188	3e-13	50.0
LXL04_039510	`PF23598.2`	LRR_14	199	281	3e-13	50.0
LXL04_039510	`PF11721.15`	Malectin	361	542	1.9e-40	139.3
LXL04_039510	`PF00069.32`	Pkinase	630	836	1.9e-44	152.8
LXL04_039510	`PF07714.24`	PK_Tyr_Ser-Thr	632	895	6e-48	164.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`C0LGH3`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	55.831%	Swiss-Prot	strong database homology
`C0LGH2`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	54.222%	Swiss-Prot	strong database homology
`C0LGG8`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	42.275%	Swiss-Prot	moderate database homology
`C0LGG9`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	41.164%	Swiss-Prot	moderate database homology
`C0LGE0`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	41.170%	Swiss-Prot	moderate database homology

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