LXL04_039328 | RubberDandelionOmics

Gene overview

LXL04_039328

Reference: OH-1004 Chr: JAJTUU010000010.1 Coordinates: 3148258-3150208 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

708 bp · LXL04_039328|LXL04_039328|OH1004|cDNA

ATGGGTGATAGTCAGTACTCATTTTCTCTTACAACTTTCAGCCCTTCAGGAAAGCTTGTTCAGATTGAACATGCCCTAACAGCTGTTGGTTCTGGGCAAACTTCATTGGGAATTAAAGCTTCAAATGGGGTTGTAATTGCAACTGAAAAGAAGCTCCCATCAATCTTAGTCGATGAGACCTCTGTGCAAAAGATTCAGATTTTGACTCCTAATATTGGAGTTGTATATAGTGGCATGGGGCCCGATTCTAGGGTTTTAGT...

CDS

Download CDS FASTA

708 bp · LXL04_039328|LXL04_039328|OH1004|CDS

ATGGGTGATAGTCAGTACTCATTTTCTCTTACAACTTTCAGCCCTTCAGGAAAGCTTGTTCAGATTGAACATGCCCTAACAGCTGTTGGTTCTGGGCAAACTTCATTGGGAATTAAAGCTTCAAATGGGGTTGTAATTGCAACTGAAAAGAAGCTCCCATCAATCTTAGTCGATGAGACCTCTGTGCAAAAGATTCAGATTTTGACTCCTAATATTGGAGTTGTATATAGTGGCATGGGGCCCGATTCTAGGGTTTTAGT...

Protein

Download Protein FASTA

235 aa · LXL04_039328|LXL04_039328|OH1004|PROTEIN

MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELEDAIHTAILTLKEGFEGQISGKNIEIGVIEADKTFRVLTAAQIEDYLQEVE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039328`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_039328

Location JAJTUU010000010.1:3148258-3150208 (-)

Description Similar to PAB1: Proteasome subunit alpha type-2-A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16470`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release
`At1g79210`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0387100`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release
`UniProt: A2YVR7`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_039328 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0010043 response to zinc ion Biological Process

GO:0010498 proteasomal protein catabolic process Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0000502 proteasome complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005839 proteasome core complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0019773 proteasome core complex, alpha-subunit complex Cellular Component

KEGG gene cross-reference

ath:AT1G16470

ath:AT1G79210

ddi:DDB_G0292122

dosa:Os03g0387100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.714

Rank 1 · LXL04_039328 · OH-1004

Nucleus0.629

Rank 2 · LXL04_039328 · OH-1004

Mitochondrion0.045

Rank 3 · LXL04_039328 · OH-1004

Cell membrane0.032

Rank 4 · LXL04_039328 · OH-1004

Peroxisome0.030

Rank 5 · LXL04_039328 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10584.15Proteasome_A_N6-28 aa

PF00227.32Proteasome31-213 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039328	`PF10584.15`	Proteasome_A_N	6	28	6.6e-09	36.0
LXL04_039328	`PF00227.32`	Proteasome	31	213	1.7e-59	201.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23708`	Arabidopsis thaliana	Proteasome subunit alpha type-2-A	93.191%	Swiss-Prot	strong database homology
`Q8L4A7`	Arabidopsis thaliana	Proteasome subunit alpha type-2-B	92.340%	Swiss-Prot	strong database homology
`Q10KF0`	Oryza sativa subsp. japonica	Proteasome subunit alpha type-2	89.362%	Swiss-Prot	strong database homology
`A2YVR7`	Oryza sativa subsp. indica	Proteasome subunit alpha type-2	89.362%	Swiss-Prot	strong database homology

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