Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2946 bp · LXL04_039277|LXL04_039277|OH1004|cDNA
ATGAACACGAACGAAGCCAGCACTTTCGACGGCGGTAAATTTCACACCGTGCAGCCTCTTCGCGACTTAAAATCAAATTGGGAGGTAGATCTTGCCAATGATCTCCAAGAGTATTTGCTTAAGATCTGCTCCGGTGAGATTACTGGCGGTGAAGATGATAGTCACCTATCTATGAATTTTGCCGAAGGCACTTTCCTCTTCTCCCTATATAAAGCACCTGTAAAGGTCATCAAAACATTAGAGCAGGTAAGACGACGATT...
2763 bp · LXL04_039277|LXL04_039277|OH1004|CDS
ATGAACACGAACGAAGCCAGCACTTTCGACGGCGGTAAATTTCACACCGTGCAGCCTCTTCGCGACTTAAAATCAAATTGGGAGGTAGATCTTGCCAATGATCTCCAAGAGTATTTGCTTAAGATCTGCTCCGGTGAGATTACTGGCGGTGAAGATGATAGTCACCTATCTATGAATTTTGCCGAAGGCACTTTCCTCTTCTCCCTATATAAAGCACCTGTAAAGGTCATCAAAACATTAGAGCAGGTAAGACGACGATT...
Protein
Download Protein FASTA920 aa · LXL04_039277|LXL04_039277|OH1004|PROTEIN
MNTNEASTFDGGKFHTVQPLRDLKSNWEVDLANDLQEYLLKICSGEITGGEDDSHLSMNFAEGTFLFSLYKAPVKVIKTLEQVRRRFFWGGSQDKEKISWIAWDKTLDKQENGGLGIGSLSAQNIALLAKWWWRFKKGGDKLWKIVIKSIHGPDGGFNAPSRTKRRSPCWGNIVDLSKPLLKHGIDLNSLFSESQGCIVWNLESSGIFTVGSLRRHIDESSLASEIKEWNWHKLLPRKVNILTWRLAHGWLPTKVNLTKR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_039277 |
|---|---|
| TK1151 ID | TkA06G479550 |
| OH-1004 ID | LXL04_039277 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 82.200 |
| Protein coverage (%) | TK1151 54.098 / OH-1004 39.674Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_039277 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:64376731-64382012 (+) | |||||||||
| Description | Similar to CAPH2: Condensin-2 complex subunit H2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006974 DNA damage response Biological Process GO:0007076 mitotic chromosome condensation Biological Process GO:0010032 meiotic chromosome condensation Biological Process GO:0045739 positive regulation of DNA repair Biological Process GO:0051306 mitotic sister chromatid separation Biological Process GO:0051309 female meiosis chromosome separation Biological Process GO:0051984 positive regulation of chromosome segregation Biological Process GO:1905820 positive regulation of chromosome separation Biological Process GO:0000793 condensed chromosome Cellular Component GO:0000794 condensed nuclear chromosome Cellular Component GO:0000796 condensin complex Cellular Component GO:0005634 nucleus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G16730 bta:767978 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06278.17CNDH2_N14-66 aaPF13966.12zf-RVT208-292 aaPF06278.17CNDH2_N479-529 aaPF16869.11CNDH2_M534-675 aaPF16858.12CNDH2_C837-884 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_039277 | PF06278.17 | CNDH2_N | 14 | 66 | 4.8e-32 | 111.2 |
| LXL04_039277 | PF13966.12 | zf-RVT | 208 | 292 | 3e-18 | 67.0 |
| LXL04_039277 | PF06278.17 | CNDH2_N | 479 | 529 | 4.8e-32 | 111.2 |
| LXL04_039277 | PF16869.11 | CNDH2_M | 534 | 675 | 1.3e-22 | 81.7 |
| LXL04_039277 | PF16858.12 | CNDH2_C | 837 | 884 | 4.1e-06 | 27.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.