Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2238 bp · LXL04_039182|LXL04_039182|OH1004|cDNA
ATGGGAATTTGGAGTAGGTTCGGAACAGCGATTACAAGTATCTGCACATGTGGAGGAGATCTGCAGGTTATGTGTGAGATGTTGATATTAGTGCGATTCAGAGTTGATCCATTTGTAATTATGTACATGTCAAATCTCATTTGTCTTTCCGTGTGCCATCCCAGGGAAACTCCAACACCACGAGGGACTTGGACCAATGTCTTGTATGGGTGTACGGTTACGGATTCAAGATCACCATGGCACAAAGTGGTGATTGATAA...
2238 bp · LXL04_039182|LXL04_039182|OH1004|CDS
ATGGGAATTTGGAGTAGGTTCGGAACAGCGATTACAAGTATCTGCACATGTGGAGGAGATCTGCAGGTTATGTGTGAGATGTTGATATTAGTGCGATTCAGAGTTGATCCATTTGTAATTATGTACATGTCAAATCTCATTTGTCTTTCCGTGTGCCATCCCAGGGAAACTCCAACACCACGAGGGACTTGGACCAATGTCTTGTATGGGTGTACGGTTACGGATTCAAGATCACCATGGCACAAAGTGGTGATTGATAA...
Protein
Download Protein FASTA745 aa · LXL04_039182|LXL04_039182|OH1004|PROTEIN
MGIWSRFGTAITSICTCGGDLQVMCEMLILVRFRVDPFVIMYMSNLICLSVCHPRETPTPRGTWTNVLYGCTVTDSRSPWHKVVIDNGILQLTLSKPDGLVTGIRYNGLDNLLEVQNHEGNRGYWDVVWSALDDSGRKGVFEVIKGTRFKVIVETEEQVEVSFSRTWEPCLKGKLAPINIDKRFVVLGGSSGFYSYAIYEHLGSEEWQAFSLAETRIAFKLRKDKFHYMAVSDDRRRYMPMPEDRLPGRAQPLAYQEAVS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_039182 |
|---|---|
| TK1151 ID | TkA04G513400 |
| OH-1004 ID | LXL04_039182 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 87.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_039182 |
|---|---|
| Location | Chr09:61795977-61801706 (-) |
| Description | Similar to rhiE: Rhamnogalacturonate lyase (Dickeya dadantii (strain 3937) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000272 polysaccharide catabolic process Biological Process GO:0005975 carbohydrate metabolic process Biological Process GO:0045490 pectin catabolic process Biological Process GO:0071555 cell wall organization Biological Process GO:0005576 extracellular region Cellular Component GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides Molecular Function GO:0030246 carbohydrate binding Molecular Function GO:0102210 rhamnogalacturonan endolyase activity Molecular Function |
| KEGG gene cross-reference | ang:An11g00390 ani:ANIA_06395 ddd:Dda3937_01465 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06045.18Rhamnogal_lyase77-273 aaPF14686.13fn3_3459-530 aaPF14683.13CBM-like545-733 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_039182 | PF06045.18 | Rhamnogal_lyase | 77 | 273 | 3.8e-87 | 291.8 |
| LXL04_039182 | PF14686.13 | fn3_3 | 459 | 530 | 1.4e-24 | 86.4 |
| LXL04_039182 | PF14683.13 | CBM-like | 545 | 733 | 6.8e-50 | 169.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.