LXL04_039178 | RubberDandelionOmics

Gene overview

LXL04_039178

Reference: OH-1004 Chr: Chr09 Coordinates: 61773338-61774585 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · LXL04_039178|LXL04_039178|OH1004|cDNA

ATGGAGGGATGGGATCCGACCACCAAGTCAACATTGACTCAAATTCCTCTCCTAACAGTAAAAGCCGGTCCTCGCGACGGCGCGTCATGGACTCAGCGCCTGAAGGAGGAGTACAAAGCCTTGATCGCATATACTTCAATGAACAAATCCAAAGACAACGATTGGTTTCGTATTTCTGCTGCTAATCCCGAAGGAACACGATGGACCGGAAAGTGTTGGTATGTGCATAATTTGCTCAAGTATGAATTCGATCTCCAATT...

CDS

Download CDS FASTA

525 bp · LXL04_039178|LXL04_039178|OH1004|CDS

ATGGAGGGATGGGATCCGACCACCAAGTCAACATTGACTCAAATTCCTCTCCTAACAGTAAAAGCCGGTCCTCGCGACGGCGCGTCATGGACTCAGCGCCTGAAGGAGGAGTACAAAGCCTTGATCGCATATACTTCAATGAACAAATCCAAAGACAACGATTGGTTTCGTATTTCTGCTGCTAATCCCGAAGGAACACGATGGACCGGAAAGTGTTGGTATGTGCATAATTTGCTCAAGTATGAATTCGATCTCCAATT...

Protein

Download Protein FASTA

174 aa · LXL04_039178|LXL04_039178|OH1004|PROTEIN

MEGWDPTTKSTLTQIPLLTVKAGPRDGASWTQRLKEEYKALIAYTSMNKSKDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTHKMYRGGKICLTVHFKPLWAKNSPRFGIAHALCLGLAPWLAAEIPVLVDSGMIKHKDDAVSTSET

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039178`
TK1151 ID	TkA04G513370
OH-1004 ID	LXL04_039178
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_039178

Location Chr09:61773338-61774585 (+)

Description Similar to At1g27530: Ubiquitin-fold modifier-conjugating enzyme 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g27530`	E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0205200`	E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	No verified direct reference in this release
`UniProt: A2Z5S8`	E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039178 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0034976 response to endoplasmic reticulum stress Biological Process

GO:0061709 reticulophagy Biological Process

GO:0071569 protein ufmylation Biological Process

GO:1990592 protein K69-linked ufmylation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0061657 UFM1 conjugating enzyme activity Molecular Function

GO:0071568 UFM1 transferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G27530

ddi:DDB_G0289037

dosa:Os10g0205200

nve:5506607

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.565

Rank 1 · LXL04_039178 · OH-1004

Nucleus0.390

Rank 2 · LXL04_039178 · OH-1004

Cell membrane0.121

Rank 3 · LXL04_039178 · OH-1004

Golgi apparatus0.117

Rank 4 · LXL04_039178 · OH-1004

Endoplasmic reticulum0.097

Rank 5 · LXL04_039178 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08694.17UFC18-163 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039178	`PF08694.17`	UFC1	8	163	7.4e-84	279.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SXC8`	Arabidopsis thaliana	Ubiquitin-fold modifier-conjugating enzyme 1	88.506%	Swiss-Prot	strong database homology
`Q8S625`	Oryza sativa subsp. japonica	Ubiquitin-fold modifier-conjugating enzyme 1	83.234%	Swiss-Prot	strong database homology
`A2Z5S8`	Oryza sativa subsp. indica	Ubiquitin-fold modifier-conjugating enzyme 1	83.234%	Swiss-Prot	strong database homology

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