LXL04_039169 | RubberDandelionOmics

Gene overview

LXL04_039169

Reference: OH-1004 Chr: Chr09 Coordinates: 61094093-61095415 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

768 bp · LXL04_039169|LXL04_039169|OH1004|cDNA

ATGGCAACATCATCAGTTACCGCAACTGGGTTTTTTTCTTCCTTCCATGGAAGTTGGGGAACTTTAATGGCAGGTGAAGATTATGGCGCCTTGGTCGCTAAAACCACACCCAAGCTGGTTCGAATTGGGAATCCCTTAAGATATGGTCCGATGATGGGAAACGTTAACGAAGGAAAAGGGCCTTTTGCTCCGGTAGTTGTCGTCACACGAAACATCGTTGGAAAGAAGCGATTCAATCAGCTTAGAGGAAAAGCAATTGC...

CDS

Download CDS FASTA

768 bp · LXL04_039169|LXL04_039169|OH1004|CDS

ATGGCAACATCATCAGTTACCGCAACTGGGTTTTTTTCTTCCTTCCATGGAAGTTGGGGAACTTTAATGGCAGGTGAAGATTATGGCGCCTTGGTCGCTAAAACCACACCCAAGCTGGTTCGAATTGGGAATCCCTTAAGATATGGTCCGATGATGGGAAACGTTAACGAAGGAAAAGGGCCTTTTGCTCCGGTAGTTGTCGTCACACGAAACATCGTTGGAAAGAAGCGATTCAATCAGCTTAGAGGAAAAGCAATTGC...

Protein

Download Protein FASTA

255 aa · LXL04_039169|LXL04_039169|OH1004|PROTEIN

MATSSVTATGFFSSFHGSWGTLMAGEDYGALVAKTTPKLVRIGNPLRYGPMMGNVNEGKGPFAPVVVVTRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADSKQRQGDSPPVTVTETQTIYVSVDGNVENGKGPTAADLESFAQIDPLTGDEASIFNDNQDFQIENLSSVSNDAENSHFWEPLDMSAGPKVEKFKPKAPTRKVENISSEMDYMDNESIPMFSPDELLGSSYNGITDSIPVPDFHVNEEQPPIC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039169`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_039169

Location Chr09:61094093-61095415 (+)

Description Similar to PGR5: Protein PROTON GRADIENT REGULATION 5, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g05620`	Critical for growth under fluctuating-light conditions.	PGR5 is involved in cyclic electron flow around photosystem I and is essential for photoprotection in Arabidopsis.2002 · DOI: 10.1016/s0092-8674(02)00867-x The role of PGR5 in the redox poising of photosynthetic electron transport.2007 · DOI: 10.1016/j.bbabio.2007.07.007 A balanced PGR5 level is required for chloroplast development and optimum operation of cyclic electron transport around photosystem I.2007 · DOI: 10.1093/pcp/pcm116 Genetic characterization of a flap1 null mutation in Arabidopsis npq4 and pgr5 plants suggests that the regulatory role of FLAP1 involves the control of proton homeostasis in chloroplasts.2019 · DOI: 10.1007/s11120-018-0575-z Arabidopsis mutants lacking DLDG1 and non-photochemical quenching-related proteins reveal the regulatory role of DLDG1 in chloroplast pH homeostasis.2023 · DOI: 10.1002/1873-3468.14687

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039169 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0009773 photosynthetic electron transport in photosystem I Biological Process

GO:0010117 photoprotection Biological Process

GO:0071484 cellular response to light intensity Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009055 electron transfer activity Molecular Function

KEGG gene cross-reference

ath:AT2G05620

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.432

Rank 1 · LXL04_039169 · OH-1004

Cytoplasm0.385

Rank 2 · LXL04_039169 · OH-1004

Cell membrane0.127

Rank 3 · LXL04_039169 · OH-1004

Endoplasmic reticulum0.105

Rank 4 · LXL04_039169 · OH-1004

Mitochondrion0.099

Rank 5 · LXL04_039169 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SL05`	Arabidopsis thaliana	Protein PROTON GRADIENT REGULATION 5, chloroplastic	63.248%	Swiss-Prot	weak database homology

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