LXL04_038977 | RubberDandelionOmics

Gene overview

LXL04_038977

Reference: OH-1004 Chr: Chr09 Coordinates: 55283150-55287494 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2670 bp · LXL04_038977|LXL04_038977|OH1004|cDNA

ATGTACCGCGAAGGGGAAAATGCACCAGCTGTCCCAGTTCAGCTGCACCTCCTTCCCCCGGTTCTTTATCCAAAGGAAAGACTGTGCTTTGATTTCCTCGATGAGCCGACCTGGTGCAGTCCTCATGTTGTTAAAGACCAGGATGCGTGGGTGAGGTTGAAAAGCTGCTTCACACCCGACACCACATCATCTATTGATCTTGAGTTAGATAAAATCTTCAGTAGCATTGTCCAATTTCACGGCTGGCAACGTAGATTCAT...

CDS

Download CDS FASTA

2670 bp · LXL04_038977|LXL04_038977|OH1004|CDS

ATGTACCGCGAAGGGGAAAATGCACCAGCTGTCCCAGTTCAGCTGCACCTCCTTCCCCCGGTTCTTTATCCAAAGGAAAGACTGTGCTTTGATTTCCTCGATGAGCCGACCTGGTGCAGTCCTCATGTTGTTAAAGACCAGGATGCGTGGGTGAGGTTGAAAAGCTGCTTCACACCCGACACCACATCATCTATTGATCTTGAGTTAGATAAAATCTTCAGTAGCATTGTCCAATTTCACGGCTGGCAACGTAGATTCAT...

Protein

Download Protein FASTA

889 aa · LXL04_038977|LXL04_038977|OH1004|PROTEIN

MYREGENAPAVPVQLHLLPPVLYPKERLCFDFLDEPTWCSPHVVKDQDAWVRLKSCFTPDTTSSIDLELDKIFSSIVQFHGWQRRFMAGNLIYICFYTYMDRFLDYIVDGLCFSNCSEKTPELETLTLSMKLLNLDADQTLEGSPNCDSENVVSNGGESNSDIHSDQEQHTLPIFEKIEKLSNKVKILRREHIALSNEVKTITSDSLPGSEVFTALQNLGEEHETLKKKYQEECQTLKTKFHQESTERRKLYNEVIELKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038977`
TK1151 ID	TkA04G489140
OH-1004 ID	LXL04_038977
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.500
Protein coverage (%)	TK1151 99.871 / OH-1004 86.952 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038977

Location Chr09:55283150-55287494 (-)

Description Similar to KIN14S: Kinesin-like protein KIN-14S

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g27550`	Kinesin-like protein KIN-14S.	No verified direct reference in this release
`At2g22610`	Kinesin-like protein KIN-14R.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0397900`	Kinesin-like protein KIN-14J.	No verified direct reference in this release
`Os12g0616000`	Kinesin-like protein KIN-14R.	No verified direct reference in this release
`Os03g0114000`	Kinesin-like protein KIN-14E.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038977 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007017 microtubule-based process Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0051225 spindle assembly Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005871 kinesin complex Cellular Component

GO:0005874 microtubule Cellular Component

GO:0015630 microtubule cytoskeleton Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

KEGG gene cross-reference

ath:AT2G22610

ath:AT5G27550

dosa:Os03g0114000

dosa:Os05g0397900

dosa:Os12g0616000

osa:4338710

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.616

Rank 1 · LXL04_038977 · OH-1004

Nucleus0.383

Rank 2 · LXL04_038977 · OH-1004

Cell membrane0.069

Rank 3 · LXL04_038977 · OH-1004

Mitochondrion0.064

Rank 4 · LXL04_038977 · OH-1004

Golgi apparatus0.046

Rank 5 · LXL04_038977 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16796.12Microtub_bd242-402 aa

PF00225.30Kinesin267-587 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038977	`PF16796.12`	Microtub_bd	242	402	1.4e-45	155.7
LXL04_038977	`PF00225.30`	Kinesin	267	587	2.3e-113	379.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K4C5`	Arabidopsis thaliana	Kinesin-like protein KIN-14S	59.445%	Swiss-Prot	strong database homology
`F4IJK6`	Arabidopsis thaliana	Kinesin-like protein KIN-14R	53.360%	Swiss-Prot	moderate database homology
`Q75HV1`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14J	51.897%	Swiss-Prot	strong database homology
`Q2QM62`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14R	56.024%	Swiss-Prot	moderate database homology
`B9FAF3`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14E	51.832%	Swiss-Prot	moderate database homology

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