Gene Card
Gene overview
cDNA / CDS / Protein Sequences
456 bp · LXL04_038976|LXL04_038976|OH1004|cDNA
ATGACATGTCATCCCACCATCACCACCGTCGCCGCCGCCCTTGCTACTGTCAAACTGGCGATCGATAATCAGGTTGCCACCATCGTTCGTGAAATCAAACCCAAGAACCGCCGGATTATGGGTGCCGGAGGacctgaagaagaagaacaaaaGTGGCCGCCATGGTTGAAACCGATGCTTCGAGAAAGCTTCTTTGTTCAATGCAAATTACACAAGTCTGAATGCAATATGATCGATCAAATGCTCTTTATGACCATGGA...
456 bp · LXL04_038976|LXL04_038976|OH1004|CDS
ATGACATGTCATCCCACCATCACCACCGTCGCCGCCGCCCTTGCTACTGTCAAACTGGCGATCGATAATCAGGTTGCCACCATCGTTCGTGAAATCAAACCCAAGAACCGCCGGATTATGGGTGCCGGAGGACCTGAAGAAGAAGAACAAAAGTGGCCGCCATGGTTGAAACCGATGCTTCGAGAAAGCTTCTTTGTTCAATGCAAATTACACAAGTCTGAATGCAATATGATCGATCAAATGCTCTTTATGACCATGGA...
Protein
Download Protein FASTA151 aa · LXL04_038976|LXL04_038976|OH1004|PROTEIN
MTCHPTITTVAAALATVKLAIDNQVATIVREIKPKNRRIMGAGGPEEEEQKWPPWLKPMLRESFFVQCKLHKSECNMIDQMLFMTMESQAEALNQLTTDDLEGKFAMLESTSVSDHLASLKKELSGTTKKGELPPGRTSFSSQTASPSPAE
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038976 |
|---|---|
| TK1151 ID | TkA04G489130 |
| OH-1004 ID | LXL04_038976 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 97.000 |
| Protein coverage (%) | TK1151 48.529 / OH-1004 43.709Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038976 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:55281124-55282637 (+) | ||||||||||||
| Description | Similar to IM30: Membrane-associated 30 kDa protein, chloroplastic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0010027 thylakoid membrane organization Biological Process GO:0016050 vesicle organization Biological Process GO:0005634 nucleus Cellular Component GO:0009507 chloroplast Cellular Component GO:0009534 chloroplast thylakoid Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0009706 chloroplast inner membrane Cellular Component GO:0009707 chloroplast outer membrane Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0042644 chloroplast nucleoid Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT1G65260 dosa:Os01g0895100 osa:4324967 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.