LXL04_038834 | RubberDandelionOmics

Gene overview

LXL04_038834

Reference: OH-1004 Chr: Chr09 Coordinates: 51630439-51633256 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1821 bp · LXL04_038834|LXL04_038834|OH1004|cDNA

ATGTCGTCATCCGATGAACAAATAGGAGCGTCAATTGATCGTATTACGACTCATTTACTAGAACAATTACAAAATTCATCGCCAAGCCGCGGGCCTCGTTTACAGAGAAGATATATTGATCGGGGAAGAGCGGATGCCGAACAATGTCTCTTTAGGGATTATTTTGCTGAAAATCCCACATATCCAGAGTATAAATTCCGACGTCGGTTTCGCATGCGCAAATCATTGTTTTTGAAGATTGTTGGAGACATGGAGGCATC...

CDS

Download CDS FASTA

1821 bp · LXL04_038834|LXL04_038834|OH1004|CDS

ATGTCGTCATCCGATGAACAAATAGGAGCGTCAATTGATCGTATTACGACTCATTTACTAGAACAATTACAAAATTCATCGCCAAGCCGCGGGCCTCGTTTACAGAGAAGATATATTGATCGGGGAAGAGCGGATGCCGAACAATGTCTCTTTAGGGATTATTTTGCTGAAAATCCCACATATCCAGAGTATAAATTCCGACGTCGGTTTCGCATGCGCAAATCATTGTTTTTGAAGATTGTTGGAGACATGGAGGCATC...

Protein

Download Protein FASTA

606 aa · LXL04_038834|LXL04_038834|OH1004|PROTEIN

MSSSDEQIGASIDRITTHLLEQLQNSSPSRGPRLQRRYIDRGRADAEQCLFRDYFAENPTYPEYKFRRRFRMRKSLFLKIVGDMEASHDYFKQRRSASGMLGFHPIQRCTAVLRMLAYGTHPDALDESIRMSARVAKYLQRVQIVRSREIHGDLRRHLVDHLWTVDHLDLNMDPVDEYEDWARRNGNSSSNTLSFYRVTPSITFNLIWILCINLSAKLKKKMRARTERDEVSKDLSVWLTKPLCFLIVFVIGIVIGLVSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038834`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038834

Location Chr09:51630439-51633256 (-)

Description Similar to BC10: Glycosyltransferase BC10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0170000`	Glycosyltransferase required for the regulation of cellulose biosynthesis in the cell wall.	BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.).2009 · DOI: 10.1111/j.1365-313x.2008.03703.x A Novel FC116/BC10 Mutation Distinctively Causes Alteration in the Expression of the Genes for Cell Wall Polymer Synthesis in Rice.2016 · DOI: 10.3389/fpls.2016.01366

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038834 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009664 plant-type cell wall organization Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

dosa:Os05g0170000

osa:4337935

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.504

Rank 1 · LXL04_038834 · OH-1004

Endoplasmic reticulum0.217

Rank 2 · LXL04_038834 · OH-1004

Nucleus0.101

Rank 3 · LXL04_038834 · OH-1004

Cell membrane0.097

Rank 4 · LXL04_038834 · OH-1004

Cytoplasm0.082

Rank 5 · LXL04_038834 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28509.1DUF841848-84 aa

PF02485.28Branch353-564 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038834	`PF28509.1`	DUF8418	48	84	2.8e-18	66.1
LXL04_038834	`PF02485.28`	Branch	353	564	2.4e-70	237.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q65XS5`	Oryza sativa subsp. japonica	Glycosyltransferase BC10	33.754%	Swiss-Prot	weak database homology

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