LXL04_038757 | RubberDandelionOmics

Gene overview

LXL04_038757

Reference: OH-1004 Chr: Chr09 Coordinates: 49858778-49862927 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1854 bp · LXL04_038757|LXL04_038757|OH1004|cDNA

ATGTGGCCCAGCGTCCCTTCCTCCTCCGGTCTCACCGTCGTCACATTGTTCATCGCATCGTTCCTCCTCATATCATCGCCGGTGGTCTCTTCCGACTCTGATCACAAGTATCAACCAGATGACACTGTTGACCTATGGGTGAATAAAGTTGGGCCTTATAATAATCCACAAGAAACATATAATTATTACAGCCTTCCATTTTGTCGCCCACCTGGTCATGCTGGCCACAAATGGGGTGGTCTTGGTGAAGTATTGGGTGG...

CDS

Download CDS FASTA

1854 bp · LXL04_038757|LXL04_038757|OH1004|CDS

ATGTGGCCCAGCGTCCCTTCCTCCTCCGGTCTCACCGTCGTCACATTGTTCATCGCATCGTTCCTCCTCATATCATCGCCGGTGGTCTCTTCCGACTCTGATCACAAGTATCAACCAGATGACACTGTTGACCTATGGGTGAATAAAGTTGGGCCTTATAATAATCCACAAGAAACATATAATTATTACAGCCTTCCATTTTGTCGCCCACCTGGTCATGCTGGCCACAAATGGGGTGGTCTTGGTGAAGTATTGGGTGG...

Protein

Download Protein FASTA

617 aa · LXL04_038757|LXL04_038757|OH1004|PROTEIN

MWPSVPSSSGLTVVTLFIASFLLISSPVVSSDSDHKYQPDDTVDLWVNKVGPYNNPQETYNYYSLPFCRPPGHAGHKWGGLGEVLGGNELIDSQIDVKFQKNVEKTTICDLELDEPKVLQFTHAIEHNYWFEFFMGFVGELHSDRNNDNKHMLFTHKNITIKYNKDQIIHVNLTQENPKPLEVGRKLDMTYSVKWSETNITFGRRFDVYLDYHFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038757`
TK1151 ID	TkA04G462660
OH-1004 ID	LXL04_038757
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	98.000
Protein coverage (%)	TK1151 98.653 / OH-1004 94.003 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038757

Location Chr09:49858778-49862927 (+)

Description Similar to TMN1: Transmembrane 9 superfamily member 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10950`	Transmembrane 9 superfamily member 1.	No verified direct reference in this release
`At5g37310`	Transmembrane 9 superfamily member 4.	No verified direct reference in this release
`At2g01970`	Transmembrane 9 superfamily member 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038757 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0072657 protein localization to membrane Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005801 cis-Golgi network Cellular Component

GO:0005802 trans-Golgi network Cellular Component

KEGG gene cross-reference

ath:AT1G10950

ath:AT2G01970

ath:AT5G37310

hsa:56889

mmu:107358

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.335

Rank 1 · LXL04_038757 · OH-1004

Golgi apparatus0.284

Rank 2 · LXL04_038757 · OH-1004

Endoplasmic reticulum0.191

Rank 3 · LXL04_038757 · OH-1004

Cytoplasm0.191

Rank 4 · LXL04_038757 · OH-1004

Cell membrane0.138

Rank 5 · LXL04_038757 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02990.22EMP7059-545 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038757	`PF02990.22`	EMP70	59	545	7.2e-171	570.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q940G0`	Arabidopsis thaliana	Transmembrane 9 superfamily member 1	86.477%	Swiss-Prot	strong database homology
`Q9FHT4`	Arabidopsis thaliana	Transmembrane 9 superfamily member 4	40.404%	Swiss-Prot	moderate database homology
`Q9ZPS7`	Arabidopsis thaliana	Transmembrane 9 superfamily member 3	38.974%	Swiss-Prot	moderate database homology

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