LXL04_038621 | RubberDandelionOmics

Gene overview

LXL04_038621

Reference: OH-1004 Chr: Chr09 Coordinates: 45863195-45866182 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1497 bp · LXL04_038621|LXL04_038621|OH1004|cDNA

ATGCCGTCAATCGCCGGCGTTAGATCGTCACCTATGTCAATCGTCGGTGCCGATGTTTCGTCACCTCAGAAACGGCGGCTGAGATCTAATTCAGATTTGGTGGATGATACAGTTATCAGTACTCCATCCAAGCCATGCTCCCCGCTGAAAACCAAATCTCCTCGTCGTTGTTGCGATGACAGTCCCAACAGAAGGCGAACAAATGTGAATGAAACAGTTGCTATTGATAATATACCTAAAATGAGGAAATCCCCAAAGAA...

CDS

Download CDS FASTA

1497 bp · LXL04_038621|LXL04_038621|OH1004|CDS

ATGCCGTCAATCGCCGGCGTTAGATCGTCACCTATGTCAATCGTCGGTGCCGATGTTTCGTCACCTCAGAAACGGCGGCTGAGATCTAATTCAGATTTGGTGGATGATACAGTTATCAGTACTCCATCCAAGCCATGCTCCCCGCTGAAAACCAAATCTCCTCGTCGTTGTTGCGATGACAGTCCCAACAGAAGGCGAACAAATGTGAATGAAACAGTTGCTATTGATAATATACCTAAAATGAGGAAATCCCCAAAGAA...

Protein

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498 aa · LXL04_038621|LXL04_038621|OH1004|PROTEIN

MPSIAGVRSSPMSIVGADVSSPQKRRLRSNSDLVDDTVISTPSKPCSPLKTKSPRRCCDDSPNRRRTNVNETVAIDNIPKMRKSPKKKLLDSFLDKPIWNPTDSEQLSAVKEALHVSTAPSMPVCREVEQKRIVEFCRQCVEQEKAGSLYVCGCPGTGKSLSMENVNKSLAVWAKETGGELPEVLTINCTSLSTTSEIFNKILENSQPHKKVNNRSTPLRQIQQLYSQKQQSTGTKMMLVIADELDYLITKDRVVLHDLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038621`
TK1151 ID	TkA04G038170
OH-1004 ID	LXL04_038621
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.300
Protein coverage (%)	TK1151 97.537 / OH-1004 41.365 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038621

Location Chr09:45863195-45866182 (-)

Description Similar to CDC6B: Cell division control protein 6 homolog B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07270`	May be involved in the initiation of DNA replication.	No verified direct reference in this release
`At2g29680`	May be involved in the initiation of DNA replication.	Expression and stability of Arabidopsis CDC6 are associated with endoreplication.2001 · DOI: 10.1105/tpc.010329

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0856000`	May be involved in the initiation of DNA replication.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038621 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000076 DNA replication checkpoint signaling Biological Process

GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity Biological Process

GO:0006270 DNA replication initiation Biological Process

GO:0007089 traversing start control point of mitotic cell cycle Biological Process

GO:0008156 negative regulation of DNA replication Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0030071 regulation of mitotic metaphase/anaphase transition Biological Process

GO:0032467 positive regulation of cytokinesis Biological Process

GO:0033314 mitotic DNA replication checkpoint signaling Biological Process

GO:0042023 DNA endoreduplication Biological Process

GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity Biological Process

GO:0048146 positive regulation of fibroblast proliferation Biological Process

KEGG gene cross-reference

ath:AT1G07270

ath:AT2G29680

dosa:Os01g0856000

hsa:990

mmu:23834

osa:4324832

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.897

Rank 1 · LXL04_038621 · OH-1004

Cytoplasm0.143

Rank 2 · LXL04_038621 · OH-1004

Mitochondrion0.029

Rank 3 · LXL04_038621 · OH-1004

Cell membrane0.019

Rank 4 · LXL04_038621 · OH-1004

Plastid0.012

Rank 5 · LXL04_038621 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13401.13AAA_22145-264 aa

PF22606.3Cdc6-ORC-like_ATPase_lid304-361 aa

PF09079.18WHD_Cdc6394-485 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038621	`PF13401.13`	AAA_22	145	264	1.9e-13	51.6
LXL04_038621	`PF22606.3`	Cdc6-ORC-like_ATPase_lid	304	361	2.9e-10	40.6
LXL04_038621	`PF09079.18`	WHD_Cdc6	394	485	2e-22	79.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W032`	Arabidopsis thaliana	DNA replication factor CDC6B	56.823%	Swiss-Prot	strong database homology
`O82387`	Arabidopsis thaliana	DNA replication factor CDC6	53.420%	Swiss-Prot	strong database homology
`Q5N897`	Oryza sativa subsp. japonica	DNA replication factor CDC6	51.779%	Swiss-Prot	strong database homology

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