LXL04_038556 | RubberDandelionOmics

Gene overview

LXL04_038556

Reference: OH-1004 Chr: Chr09 Coordinates: 43887723-43889266 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1185 bp · LXL04_038556|LXL04_038556|OH1004|cDNA

ATGGCTACTAAGCCTTCAACACTATTAACATGGTTAGTCCTCTCAACCTGTTCACTCATTATCTTCTACTCAAAACTACTCCCACTGTACCCATCTTCAAAACCCTCAAACactccatcatcatcatcaccaccACCTCCCTGTAACCTATTCAACGGAAATTGGGTGATTGACCCCAACCACCGACGACCCATCTACGACGAGACCTGCCCTTTCCACAGAAACGCATGGAACTGTATCAGAAACCAGAGAGACAACAT...

CDS

Download CDS FASTA

1185 bp · LXL04_038556|LXL04_038556|OH1004|CDS

ATGGCTACTAAGCCTTCAACACTATTAACATGGTTAGTCCTCTCAACCTGTTCACTCATTATCTTCTACTCAAAACTACTCCCACTGTACCCATCTTCAAAACCCTCAAACACTCCATCATCATCATCACCACCACCTCCCTGTAACCTATTCAACGGAAATTGGGTGATTGACCCCAACCACCGACGACCCATCTACGACGAGACCTGCCCTTTCCACAGAAACGCATGGAACTGTATCAGAAACCAGAGAGACAACAT...

Protein

Download Protein FASTA

394 aa · LXL04_038556|LXL04_038556|OH1004|PROTEIN

MATKPSTLLTWLVLSTCSLIIFYSKLLPLYPSSKPSNTPSSSSPPPPCNLFNGNWVIDPNHRRPIYDETCPFHRNAWNCIRNQRDNMDRINSWKWVPDDCDLHEIDPFEFMSLMRDKRIGFIGDSLNENFLVSLLCILRVADMGAKKWKRKGAWRGAYFPKFNLTVAYHRAVLLAKYNQNIEEINGVKGVHRVDVDIPAKEWSEIGGFYDVLIFNTGHWWGYDKFPKDSPLVFYKGGTPIIPAPNMLEGLEIVLKNMVSY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038556`
TK1151 ID	TkA04G441810
OH-1004 ID	LXL04_038556
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038556

Location Chr09:43887723-43889266 (+)

Description Similar to TBL12: Protein trichome birefringence-like 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64470`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g14530`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g20590`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g12060`	Can complement TBR and is therefore functionally equivalent, but may work in different tissue.	No verified direct reference in this release
`At3g62390`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038556 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0030244 cellulose biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008374 O-acyltransferase activity Molecular Function

GO:0016413 O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G14530

ath:AT3G12060

ath:AT3G62390

ath:AT5G20590

ath:AT5G64470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.552

Rank 1 · LXL04_038556 · OH-1004

Endoplasmic reticulum0.075

Rank 2 · LXL04_038556 · OH-1004

Cell membrane0.052

Rank 3 · LXL04_038556 · OH-1004

Plastid0.048

Rank 4 · LXL04_038556 · OH-1004

Extracellular0.046

Rank 5 · LXL04_038556 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416.12PMR5N47-101 aa

PF13839.13PC-Esterase104-385 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038556	`PF14416.12`	PMR5N	47	101	1.3e-15	58.2
LXL04_038556	`PF13839.13`	PC-Esterase	104	385	7.7e-69	233.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FGE9`	Arabidopsis thaliana	Protein trichome birefringence-like 12	68.333%	Swiss-Prot	strong database homology
`Q9ZQR5`	Arabidopsis thaliana	Protein trichome birefringence-like 13	42.377%	Swiss-Prot	moderate database homology
`F4K5K4`	Arabidopsis thaliana	Protein trichome birefringence-like 5	31.461%	Swiss-Prot	moderate database homology
`Q9LHL6`	Arabidopsis thaliana	Protein trichome birefringence-like 1	28.889%	Swiss-Prot	weak database homology
`Q9LZQ1`	Arabidopsis thaliana	Protein trichome birefringence-like 6	30.571%	Swiss-Prot	moderate database homology

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