LXL04_038401 | RubberDandelionOmics

Gene overview

LXL04_038401

Reference: OH-1004 Chr: Chr09 Coordinates: 39803516-39806694 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1755 bp · LXL04_038401|LXL04_038401|OH1004|cDNA

ATGTTAGGGTTCTTAGTGAGAAGTGCAAAATCAACCTCACCATCATCTCCATATCGATGGCGTTCATCAATCAGCTTCGGTATGATCACGCCATCTAGCAATCGCGATTTCAGCATCCAATCACCAGGACACAATGTCCTCCCCGATGGTATCGACCGGACCTCTGATTCATTTATTCGAAACTCTAAGGAAATGGAATCTGTCATTTCTCAACTTCATTCTCGTATCTATCAGGTGACCCAAGGTGGAGGAGCAGAAGC...

CDS

Download CDS FASTA

1755 bp · LXL04_038401|LXL04_038401|OH1004|CDS

ATGTTAGGGTTCTTAGTGAGAAGTGCAAAATCAACCTCACCATCATCTCCATATCGATGGCGTTCATCAATCAGCTTCGGTATGATCACGCCATCTAGCAATCGCGATTTCAGCATCCAATCACCAGGACACAATGTCCTCCCCGATGGTATCGACCGGACCTCTGATTCATTTATTCGAAACTCTAAGGAAATGGAATCTGTCATTTCTCAACTTCATTCTCGTATCTATCAGGTGACCCAAGGTGGAGGAGCAGAAGC...

Protein

Download Protein FASTA

584 aa · LXL04_038401|LXL04_038401|OH1004|PROTEIN

MLGFLVRSAKSTSPSSPYRWRSSISFGMITPSSNRDFSIQSPGHNVLPDGIDRTSDSFIRNSKEMESVISQLHSRIYQVTQGGGAEAIKRHRSRNKLLPRERIDRLLDSSSSFLELSQLAGHELYEESLPSGGIITGIGPVHGKLCMFIANDATVKGGTYYPITVKKHLRAQEIASKCRLPCIYLVDSGGAFLPKQAEVFPDKENFGRVFYNQAIMSSEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038401`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038401

Location Chr09:39803516-39806694 (+)

Description Similar to MCCB: Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34030`	Carboxyltransferase subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038401 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006552 L-leucine catabolic process Biological Process

GO:0007563 regulation of eclosion Biological Process

GO:0015936 coenzyme A metabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:1905202 methylcrotonoyl-CoA carboxylase complex Cellular Component

GO:0004485 methylcrotonoyl-CoA carboxylase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0050897 cobalt ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G34030

cel:CELE_F02A9.10

dme:Dmel_CG3267

mmu:78038

rno:361884

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.865

Rank 1 · LXL04_038401 · OH-1004

Cytoplasm0.081

Rank 2 · LXL04_038401 · OH-1004

Nucleus0.040

Rank 3 · LXL04_038401 · OH-1004

Plastid0.033

Rank 4 · LXL04_038401 · OH-1004

Cell membrane0.017

Rank 5 · LXL04_038401 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03255.20ACCA62-249 aa

PF01039.28Carboxyl_trans91-572 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038401	`PF03255.20`	ACCA	62	249	1.5e-15	57.9
LXL04_038401	`PF01039.28`	Carboxyl_trans	91	572	3.8e-161	537.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LDD8`	Arabidopsis thaliana	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	78.108%	Swiss-Prot	strong database homology

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