LXL04_038222 | RubberDandelionOmics

Gene overview

LXL04_038222

Reference: OH-1004 Chr: Chr09 Coordinates: 34557148-34565070 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2760 bp · LXL04_038222|LXL04_038222|OH1004|cDNA

ATGCGATCTTATAGGTGTTATGTGGTTGTCATCTTATGGGTTTTGACATTGAACAATGAAGGTTTGTTGTTGTTCTCTAATGGAGGGATTACAAGCTCTTTTGTTAGAAACGAAGAAAAAAGCATAGACATGCCTTTTGATAGTGATGTGTTTACGGTTCCTTCCGGATATAATGCACCTCAACAGGTTCATATAACACAAGGAGATCATGTGGGAAAAGCAATGATAGTGTCATGGGTGACAATGGATGAACCGGGTTC...

CDS

Download CDS FASTA

2760 bp · LXL04_038222|LXL04_038222|OH1004|CDS

ATGCGATCTTATAGGTGTTATGTGGTTGTCATCTTATGGGTTTTGACATTGAACAATGAAGGTTTGTTGTTGTTCTCTAATGGAGGGATTACAAGCTCTTTTGTTAGAAACGAAGAAAAAAGCATAGACATGCCTTTTGATAGTGATGTGTTTACGGTTCCTTCCGGATATAATGCACCTCAACAGGTTCATATAACACAAGGAGATCATGTGGGAAAAGCAATGATAGTGTCATGGGTGACAATGGATGAACCGGGTTC...

Protein

Download Protein FASTA

919 aa · LXL04_038222|LXL04_038222|OH1004|PROTEIN

MRSYRCYVVVILWVLTLNNEGLLLFSNGGITSSFVRNEEKSIDMPFDSDVFTVPSGYNAPQQVHITQGDHVGKAMIVSWVTMDEPGSSMVVYWRQNSTQKSQSTGQIYTYKYYNYTSGYIHHCTIKNLEFNTKYYYEVGIGHTTRTFWFVTPPEVGPDVPYTFGIIGDLGQTYDSNSTLTHYEMNPVKGESVLYVGDLSYADHYEFHDNRRWDSWGRFVERSVAYQPWIWTVGNHELDYSPTIGENKPFKPFLHRYHVPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038222`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_038222

Location Chr09:34557148-34565070 (+)

Description Similar to PAP2: Purple acid phosphatase 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16430`	Purple acid phosphatase 10.	No verified direct reference in this release
`At2g27190`	Fe(3+)-Zn(2+) purple acid phosphatase 12.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038222 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003993 acid phosphatase activity Molecular Function

GO:0030145 manganese ion binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G16430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.343

Rank 1 · LXL04_038222 · OH-1004

Lysosome / Vacuole0.322

Rank 2 · LXL04_038222 · OH-1004

Cytoplasm0.179

Rank 3 · LXL04_038222 · OH-1004

Cell membrane0.163

Rank 4 · LXL04_038222 · OH-1004

Endoplasmic reticulum0.103

Rank 5 · LXL04_038222 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16656.12Pur_ac_phosph_N60-151 aa

PF00149.34Metallophos162-360 aa

PF14008.12Metallophos_C386-443 aa

PF16656.12Pur_ac_phosph_N512-603 aa

PF00149.34Metallophos614-812 aa

PF14008.12Metallophos_C838-897 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038222	`PF16656.12`	Pur_ac_phosph_N	60	151	7.8e-41	139.3
LXL04_038222	`PF00149.34`	Metallophos	162	360	2.6e-50	172.3
LXL04_038222	`PF14008.12`	Metallophos_C	386	443	2.6e-41	140.8
LXL04_038222	`PF16656.12`	Pur_ac_phosph_N	512	603	7.8e-41	139.3
LXL04_038222	`PF00149.34`	Metallophos	614	812	2.6e-50	172.3
LXL04_038222	`PF14008.12`	Metallophos_C	838	897	2.6e-41	140.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIV9`	Arabidopsis thaliana	Purple acid phosphatase 10	72.160%	Swiss-Prot	weak database homology
`Q38924`	Arabidopsis thaliana	Fe(3+)-Zn(2+) purple acid phosphatase 12	69.037%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card