Gene Card
Gene overview
cDNA / CDS / Protein Sequences
909 bp · LXL04_038203|LXL04_038203|OH1004|cDNA
ATGACTCAGATTAGCAAAAAAATGTATGCATTAGACCTCAAGAGAACGATTCTATGGCGTGTAGCTCTTCTCCGGCGATGTGCTAAATCTCTCTGGCACCAAATTCTTGCTTGTTGGATCGGAAAATCTGTCCGGTACCGGCAATTATTACACCCCGGCCCTTTGATTCCGACGTCTCATCGGCGGCCTTCTCCCGTGGAGACAACAACGACGACGATCGACATGGCCACCGCGAACCACCAGTCTCCATCCGGCGAAAT...
909 bp · LXL04_038203|LXL04_038203|OH1004|CDS
ATGACTCAGATTAGCAAAAAAATGTATGCATTAGACCTCAAGAGAACGATTCTATGGCGTGTAGCTCTTCTCCGGCGATGTGCTAAATCTCTCTGGCACCAAATTCTTGCTTGTTGGATCGGAAAATCTGTCCGGTACCGGCAATTATTACACCCCGGCCCTTTGATTCCGACGTCTCATCGGCGGCCTTCTCCCGTGGAGACAACAACGACGACGATCGACATGGCCACCGCGAACCACCAGTCTCCATCCGGCGAAAT...
Protein
Download Protein FASTA302 aa · LXL04_038203|LXL04_038203|OH1004|PROTEIN
MTQISKKMYALDLKRTILWRVALLRRCAKSLWHQILACWIGKSVRYRQLLHPGPLIPTSHRRPSPVETTTTTIDMATANHQSPSGEMSSSSGSSDHDQDTSDLVALKISLLGDHHIGKTSFLAKYVGKEKNQEQLQDKGTNHMDKTLCVKGARINYTIWEVGCDAFCPVCVDGDLRTSIPAACKDSVAMLFMFDLTSRCTLNSFLFSVINWHQQARTYNQNAIHVMVGSKFDEFVQLPLDLQWTIASQARAYAKAINATL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038203 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038203 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:34187985-34192582 (+) | |||||||||
| Description | Similar to spg1: Septum-promoting GTP-binding protein 1 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0001558 regulation of cell growth Biological Process GO:0006886 intracellular protein transport Biological Process GO:0006887 exocytosis Biological Process GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Biological Process GO:0006891 intra-Golgi vesicle-mediated transport Biological Process GO:0023056 positive regulation of signaling Biological Process GO:0031028 septation initiation signaling Biological Process GO:0031536 positive regulation of exit from mitosis Biological Process GO:0034389 lipid droplet organization Biological Process GO:0040001 establishment of mitotic spindle localization Biological Process GO:0042147 retrograde transport, endosome to Golgi Biological Process GO:0051301 cell division Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT2G44610 ath:AT5G03530 cel:CELE_Y92C3B.3 sce:YML064C spo:2542761 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00071.29Ras107-281 aaPF08477.20Roc107-232 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_038203 | PF00071.29 | Ras | 107 | 281 | 4.6e-14 | 53.0 |
| LXL04_038203 | PF08477.20 | Roc | 107 | 232 | 3.2e-10 | 41.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.