LXL04_038198 | RubberDandelionOmics

Gene overview

LXL04_038198

Reference: OH-1004 Chr: Chr09 Coordinates: 34042026-34048173 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2979 bp · LXL04_038198|LXL04_038198|OH1004|cDNA

ATGCATATAACCGGACCTCACTCCTCAGCACTCCTTCGTCGAGCTTCTAGGTCCTCAGCCACCAGACTTTACTCTTCTCTTTCCAGTAAATCTTCTGCGCCGTCGCCTTCACCAGTCGCGTCTCAGTCCCGATCTCATACCACCGCATCGGCGGCTTTCCGCTCCGTCCGATCTCGATGGAGCCACGGTGTTGATTGGAAGTCTCCTGTGTCGCTGTCGTCTCAGATCAGGACTACTGCTTCTCCTGTTATTGACCGATT...

CDS

Download CDS FASTA

2979 bp · LXL04_038198|LXL04_038198|OH1004|CDS

ATGCATATAACCGGACCTCACTCCTCAGCACTCCTTCGTCGAGCTTCTAGGTCCTCAGCCACCAGACTTTACTCTTCTCTTTCCAGTAAATCTTCTGCGCCGTCGCCTTCACCAGTCGCGTCTCAGTCCCGATCTCATACCACCGCATCGGCGGCTTTCCGCTCCGTCCGATCTCGATGGAGCCACGGTGTTGATTGGAAGTCTCCTGTGTCGCTGTCGTCTCAGATCAGGACTACTGCTTCTCCTGTTATTGACCGATT...

Protein

Download Protein FASTA

992 aa · LXL04_038198|LXL04_038198|OH1004|PROTEIN

MHITGPHSSALLRRASRSSATRLYSSLSSKSSAPSPSPVASQSRSHTTASAAFRSVRSRWSHGVDWKSPVSLSSQIRTTASPVIDRFHRTLATMASENVFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSEKINPLVPVDLVVDHSVQVDFARSENAVQANMELEFQRNKERFAFLKWGSKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038198`
TK1151 ID	TkAUNG029020
OH-1004 ID	LXL04_038198
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038198

Location Chr09:34042026-34048173 (+)

Description Similar to ACO3: Aconitate hydratase 3, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g05710`	Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	Selective induction and subcellular distribution of ACONITASE 3 reveal the importance of cytosolic citrate metabolism during lipid mobilization in Arabidopsis.2014 · DOI: 10.1042/bj20140430
`At4g26970`	Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	No verified direct reference in this release
`At4g35830`	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0191100`	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038198 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006097 glyoxylate cycle Biological Process

GO:0006099 tricarboxylic acid cycle Biological Process

GO:0006101 citrate metabolic process Biological Process

GO:0006102 isocitrate metabolic process Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0090351 seedling development Biological Process

GO:1990641 response to iron ion starvation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G05710

ath:AT4G26970

ath:AT4G35830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.866

Rank 1 · LXL04_038198 · OH-1004

Cytoplasm0.131

Rank 2 · LXL04_038198 · OH-1004

Nucleus0.058

Rank 3 · LXL04_038198 · OH-1004

Peroxisome0.030

Rank 4 · LXL04_038198 · OH-1004

Plastid0.026

Rank 5 · LXL04_038198 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00330.26Aconitase158-661 aa

PF00694.26Aconitase_C790-918 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038198	`PF00330.26`	Aconitase	158	661	3e-169	564.6
LXL04_038198	`PF00694.26`	Aconitase_C	790	918	1.1e-40	139.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SIB9`	Arabidopsis thaliana	Aconitate hydratase 3, mitochondrial	86.934%	Swiss-Prot	strong database homology
`Q94A28`	Arabidopsis thaliana	Aconitate hydratase 2, mitochondrial	79.643%	Swiss-Prot	strong database homology
`Q42560`	Arabidopsis thaliana	Aconitate hydratase 1	84.134%	Swiss-Prot	strong database homology
`Q6YZX6`	Oryza sativa subsp. japonica	Putative aconitate hydratase, cytoplasmic	88.170%	Swiss-Prot	strong database homology

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