Gene Card
Gene overview
cDNA / CDS / Protein Sequences
345 bp · LXL04_038118|LXL04_038118|OH1004|cDNA
ATGAGTGCTTACAAGGCTTACAAAGCAGTTGCCCCAATAGCATGGAGTCCCAACCTCTACATAACGCTAGTGAGAGGAATGCCAGGGACCAGGAAACTCCATAGACGTACCTTAGAAGCATTGCGTTTAGGAAAATGCAACCGAACTGTCATGAGATGGAACACTCCAACTGTCAGAGGAATGCTTCAACAGGTTAAAAGATTGGTTGTAATTGAGACTGAAGAAATGTTTAAGGCACGTAAAGAAAAAGAAGCTCAACA...
345 bp · LXL04_038118|LXL04_038118|OH1004|CDS
ATGAGTGCTTACAAGGCTTACAAAGCAGTTGCCCCAATAGCATGGAGTCCCAACCTCTACATAACGCTAGTGAGAGGAATGCCAGGGACCAGGAAACTCCATAGACGTACCTTAGAAGCATTGCGTTTAGGAAAATGCAACCGAACTGTCATGAGATGGAACACTCCAACTGTCAGAGGAATGCTTCAACAGGTTAAAAGATTGGTTGTAATTGAGACTGAAGAAATGTTTAAGGCACGTAAAGAAAAAGAAGCTCAACA...
Protein
Download Protein FASTA114 aa · LXL04_038118|LXL04_038118|OH1004|PROTEIN
MSAYKAYKAVAPIAWSPNLYITLVRGMPGTRKLHRRTLEALRLGKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMFKARKEKEAQHCAIRPPLVVTHVPTPPASSSSSSQVAA
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038118 |
|---|---|
| TK1151 ID | TkA04G390570 |
| OH-1004 ID | LXL04_038118 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038118 |
|---|---|
| Location | Chr09:31699554-31699997 (-) |
| Description | Similar to rpmD: 50S ribosomal protein L30 (Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006412 translation Biological Process GO:0022625 cytosolic large ribosomal subunit Cellular Component GO:0003735 structural constituent of ribosome Molecular Function |
| KEGG gene cross-reference | car:cauri_0432 cef:CE0553 cgb:cg0632 cgl:Cgl0541 dar:Daro_0337 dol:Dole_0726 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00327.26Ribosomal_L3020-69 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_038118 | PF00327.26 | Ribosomal_L30 | 20 | 69 | 5.5e-17 | 62.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.