LXL04_038070 | RubberDandelionOmics

Gene overview

LXL04_038070

Reference: OH-1004 Chr: Chr09 Coordinates: 30719933-30722650 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1422 bp · LXL04_038070|LXL04_038070|OH1004|cDNA

ATGAAGAGGCGATGGTGGAGTAAATCAGCTCTAATATGTTATCGTATTCATCGTTCTTTCTCTTCTTCTAGCAGGTCTCATGAATCCTTTAATCCCCCTCCTTCTTTCCCTCATAGAAGAGTTGTCGTCACTGGATTAGGAATGGTTACACCATTGGGTTGCGGAGTAGAAACTACATGGAACCGCTTAATCAAAGGGGAAAGCGGTATCAGAGCTTTATCCATTGAAGACCTAAAGATGAACGGATTCCATTCAGACAC...

CDS

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1422 bp · LXL04_038070|LXL04_038070|OH1004|CDS

ATGAAGAGGCGATGGTGGAGTAAATCAGCTCTAATATGTTATCGTATTCATCGTTCTTTCTCTTCTTCTAGCAGGTCTCATGAATCCTTTAATCCCCCTCCTTCTTTCCCTCATAGAAGAGTTGTCGTCACTGGATTAGGAATGGTTACACCATTGGGTTGCGGAGTAGAAACTACATGGAACCGCTTAATCAAAGGGGAAAGCGGTATCAGAGCTTTATCCATTGAAGACCTAAAGATGAACGGATTCCATTCAGACAC...

Protein

Download Protein FASTA

473 aa · LXL04_038070|LXL04_038070|OH1004|PROTEIN

MKRRWWSKSALICYRIHRSFSSSSRSHESFNPPPSFPHRRVVVTGLGMVTPLGCGVETTWNRLIKGESGIRALSIEDLKMNGFHSDTQSYTFDQLTSKVAGIVPSGTNPGEFNESSWLDSKHGKSMARFISYALCAADEALKDSNWIPCNQDEKEKTGVSIGGGIGSISDILDASQLICEKKLRRLSPFFVPRILINMAAGHVSMKYGFQGPNHAAVTACATGANSIGDAARMIQFGDADVMVAGGTEASIDALSIAGFC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038070`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038070

Location Chr09:30719933-30722650 (-)

Description Similar to KAS: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g04540`	Catalyzes all the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.	Mitochondrial protein lipoylation does not exclusively depend on the mtKAS pathway of de novo fatty acid synthesis in Arabidopsis.2007 · DOI: 10.1104/pp.107.104000

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_038070 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006637 acyl-CoA metabolic process Biological Process

GO:0010027 thylakoid membrane organization Biological Process

GO:0051790 short-chain fatty acid biosynthetic process Biological Process

GO:0051792 medium-chain fatty acid biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity Molecular Function

KEGG gene cross-reference

ath:AT2G04540

hsa:54995

mmu:71147

sme:SMc00574

spo:2541226

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.781

Rank 1 · LXL04_038070 · OH-1004

Cytoplasm0.129

Rank 2 · LXL04_038070 · OH-1004

Nucleus0.069

Rank 3 · LXL04_038070 · OH-1004

Plastid0.058

Rank 4 · LXL04_038070 · OH-1004

Peroxisome0.030

Rank 5 · LXL04_038070 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00109.33ketoacyl-synt39-304 aa

PF02801.29Ketoacyl-synt_C312-428 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038070	`PF00109.33`	ketoacyl-synt	39	304	3.9e-55	187.9
LXL04_038070	`PF02801.29`	Ketoacyl-synt_C	312	428	1.2e-35	122.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L3X9`	Arabidopsis thaliana	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial	73.191%	Swiss-Prot	strong database homology

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