LXL04_038028 | RubberDandelionOmics

Gene overview

LXL04_038028

Reference: OH-1004 Chr: Chr09 Coordinates: 29230065-29232160 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1434 bp · LXL04_038028|LXL04_038028|OH1004|cDNA

ATGGCTGTGGAGAAATCGGAAACAAAATTCCCTCGGTTCACACTTTTTCTCATAGCCGACAAAAGAGTCGATCTTTGGTCACAAATCGCAGCAACTGAATCCGAAAATGAACTTCAGCAACAACACACTGACATTGTCTACTTACgcaaaccccccccccccccaaaaaGAACGCCTACCGACCACAGGTCGGAGACAAGTATTGCTGTTGCAGTCTGCACTAAATATGGACCTAAAAAGGAGAAGCAAATCAGAAAACC...

CDS

Download CDS FASTA

1434 bp · LXL04_038028|LXL04_038028|OH1004|CDS

ATGGCTGTGGAGAAATCGGAAACAAAATTCCCTCGGTTCACACTTTTTCTCATAGCCGACAAAAGAGTCGATCTTTGGTCACAAATCGCAGCAACTGAATCCGAAAATGAACTTCAGCAACAACACACTGACATTGTCTACTTACGCAAACCCCCCCCCCCCCCAAAAAGAACGCCTACCGACCACAGGTCGGAGACAAGTATTGCTGTTGCAGTCTGCACTAAATATGGACCTAAAAAGGAGAAGCAAATCAGAAAACC...

Protein

Download Protein FASTA

477 aa · LXL04_038028|LXL04_038028|OH1004|PROTEIN

MAVEKSETKFPRFTLFLIADKRVDLWSQIAATESENELQQQHTDIVYLRKPPPPPKRTPTDHRSETSIAVAVCTKYGPKKEKQIRKPKPPLSRARGAPPQNFDKERAYFQEVDSIGLIEESPSPQRKTGILYTPYDSNSNFVHTGVWNLKTPSETYSNKTMHNDGTFFTKRSDKIEKDSEEIEFAIRKLSLNEQQWDPLSALLAGCGQLSPSTFSDVLSQYCNLESIAKVGKCMYGEVFIVGGIVCKVVPFDGDSVVNGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038028`
TK1151 ID	TkA04G376780
OH-1004 ID	LXL04_038028
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	76.400
Protein coverage (%)	TK1151 96.784 / OH-1004 87.002 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038028

Location Chr09:29230065-29232160 (-)

Description Similar to HASPIN: Serine/threonine-protein kinase haspin homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09450`	Threonine-protein kinase that phosphorylates histone H3 in vitro at 'Thr-3' (H3T3ph) and 'Thr-11' (H3T11ph), but not at 'Ser-10' (H3S10ph) or 'Ser-28' (H3S28ph).	Identification and characterization of plant Haspin kinase as a histone H3 threonine kinase.2011 · DOI: 10.1186/1471-2229-11-73 AtHaspin phosphorylates histone H3 at threonine 3 during mitosis and contributes to embryonic patterning in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2011.04699.x

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_038028 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0043687 post-translational protein modification Biological Process

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0048471 perinuclear region of cytoplasm Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0035402 histone H3T11 kinase activity Molecular Function

GO:0072354 histone H3T3 kinase activity Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G09450

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.466

Rank 1 · LXL04_038028 · OH-1004

Nucleus0.347

Rank 2 · LXL04_038028 · OH-1004

Mitochondrion0.163

Rank 3 · LXL04_038028 · OH-1004

Cell membrane0.107

Rank 4 · LXL04_038028 · OH-1004

Endoplasmic reticulum0.092

Rank 5 · LXL04_038028 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80528`	Arabidopsis thaliana	Serine/threonine-protein kinase haspin homolog	28.834%	Swiss-Prot	weak database homology

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