LXL04_037994 | RubberDandelionOmics

Gene overview

LXL04_037994

Reference: OH-1004 Chr: Chr09 Coordinates: 27630156-27652891 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

7518 bp · LXL04_037994|LXL04_037994|OH1004|cDNA

atgcatacgagacaaagcggacgcacatccccgctgaggtttgattcagagatcgaaagaaccgcaagagcaaaccgtgtcaacagacgactattaccgaacatggagggaaacaacagccaagaagtaatccaaccaccaattggacagaacccaccagcacaaatggcaggaatacaaatcccaccattagttgctccgcaagaccataacaacaacgctaatgaagggaacaacaacaacatggcaggaccaccacc...

CDS

Download CDS FASTA

7518 bp · LXL04_037994|LXL04_037994|OH1004|CDS

ATGCATACGAGACAAAGCGGACGCACATCCCCGCTGAGGTTTGATTCAGAGATCGAAAGAACCGCAAGAGCAAACCGTGTCAACAGACGACTATTACCGAACATGGAGGGAAACAACAGCCAAGAAGTAATCCAACCACCAATTGGACAGAACCCACCAGCACAAATGGCAGGAATACAAATCCCACCATTAGTTGCTCCGCAAGACCATAACAACAACGCTAATGAAGGGAACAACAACAACATGGCAGGACCACCACC...

Protein

Download Protein FASTA

2505 aa · LXL04_037994|LXL04_037994|OH1004|PROTEIN

MHTRQSGRTSPLRFDSEIERTARANRVNRRLLPNMEGNNSQEVIQPPIGQNPPAQMAGIQIPPLVAPQDHNNNANEGNNNNMAGPPPVVPQPPLNRNNQGFNGGNGQNWGNRRNQQNQGPNGGNQQGINQNEVIVEDWYDDNESQDGGQGWNPNNNQNQNNNNQGGNWNNNQNQGQNVQRRNRHQNGNFNNNIASQRTPASNPHSPHLRRAASSRRQLRKSTVGCNRPPAVLLFVFRFPATSDLAFLRRDQQPTAAVKTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037994`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_037994`
Location	Chr09:27630156-27652891 (-)
Description	Similar to TY3B-I: Transposon Ty3-I Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_037994` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0042575 DNA polymerase complex Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function
KEGG gene cross-reference	sce:YGR109W-B sce:YIL082W-A spo:2538755 spo:2541833 spo:2541991 spo:3361422 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.651

Rank 1 · LXL04_037994 · OH-1004

Nucleus0.394

Rank 2 · LXL04_037994 · OH-1004

Mitochondrion0.063

Rank 3 · LXL04_037994 · OH-1004

Cell membrane0.060

Rank 4 · LXL04_037994 · OH-1004

Endoplasmic reticulum0.052

Rank 5 · LXL04_037994 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03732.25PEG10_N-capsid643-717 aa

PF00078.33RVT_11722-1877 aa

PF17919.8RT_RNaseH_21898-1991 aa

PF17917.8RT_RNaseH1918-2021 aa

PF17921.8Integrase_H2C22123-2180 aa

PF00665.33rve2201-2294 aa

PF29688.1TnsB_C2248-2314 aa

PF31073.1DUF88032432-2481 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037994	`PF03732.25`	PEG10_N-capsid	643	717	1.8e-09	38.5
LXL04_037994	`PF00078.33`	RVT_1	1722	1877	7.1e-28	98.6
LXL04_037994	`PF17919.8`	RT_RNaseH_2	1898	1991	3.1e-28	98.5
LXL04_037994	`PF17917.8`	RT_RNaseH	1918	2021	4.4e-35	120.7
LXL04_037994	`PF17921.8`	Integrase_H2C2	2123	2180	6.7e-11	42.9
LXL04_037994	`PF00665.33`	rve	2201	2294	4.8e-17	62.8
LXL04_037994	`PF29688.1`	TnsB_C	2248	2314	1.9e-06	28.4
LXL04_037994	`PF31073.1`	DUF8803	2432	2481	2.3e-06	28.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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