LXL04_037980 | RubberDandelionOmics

Gene overview

LXL04_037980

Reference: OH-1004 Chr: Chr09 Coordinates: 27282864-27283681 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

552 bp · LXL04_037980|LXL04_037980|OH1004|cDNA

ATGGCTGAAAATACGACGACACAGGAACGCGACGAACTCACTGAAGCTCTCAATGATCTATTCACCGATGTTTCCACCATGATTAAAGGCGATCTTCAGGGTACAAACAATGTTCTCAAGTTGCTGGAAAACATGAATTTGAAAGTTGCAGAAGAGTACGAAGGATTTGGTGACGTTGCTTCTGGTTTGAGGGTTTTTGTGGAACGATTAAAGGCCAAAAGTGAGAATTATGATGAGTATGTTCAACAAATTGATGCGAT...

CDS

Download CDS FASTA

552 bp · LXL04_037980|LXL04_037980|OH1004|CDS

ATGGCTGAAAATACGACGACACAGGAACGCGACGAACTCACTGAAGCTCTCAATGATCTATTCACCGATGTTTCCACCATGATTAAAGGCGATCTTCAGGGTACAAACAATGTTCTCAAGTTGCTGGAAAACATGAATTTGAAAGTTGCAGAAGAGTACGAAGGATTTGGTGACGTTGCTTCTGGTTTGAGGGTTTTTGTGGAACGATTAAAGGCCAAAAGTGAGAATTATGATGAGTATGTTCAACAAATTGATGCGAT...

Protein

Download Protein FASTA

183 aa · LXL04_037980|LXL04_037980|OH1004|PROTEIN

MAENTTTQERDELTEALNDLFTDVSTMIKGDLQGTNNVLKLLENMNLKVAEEYEGFGDVASGLRVFVERLKAKSENYDEYVQQIDAIEKQITDLEVVISMLDKYVCLLESKVQSVYQMPASSSKTGIIDETFNTAQHESYEPTRRTSTNGAQEGPSTRPMGNEDSLWMAAYRDMIAEEIMNTQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037980`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_037980

Location Chr09:27282864-27283681 (+)

Description Similar to BLOS2: Biogenesis of lysosome-related organelles complex 1 subunit 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49550`	Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1), a complex that mediates the vacuolar degradative transport via the intracellular vesicle trafficking from the endosome to the vacuole.	BLOS1, a putative BLOC-1 subunit, interacts with SNX1 and modulates root growth in Arabidopsis.2010 · DOI: 10.1242/jcs.069732

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037980 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007020 microtubule nucleation Biological Process

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0016197 endosomal transport Biological Process

GO:0032418 lysosome localization Biological Process

GO:0032438 melanosome organization Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0051036 regulation of endosome size Biological Process

GO:0060155 platelet dense granule organization Biological Process

GO:0062196 regulation of lysosome size Biological Process

GO:0072384 organelle transport along microtubule Biological Process

GO:0000930 gamma-tubulin complex Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT5G49550

ddi:DDB_G0278387

hsa:282991

mcf:102120191

xtr:493563

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.643

Rank 1 · LXL04_037980 · OH-1004

Nucleus0.320

Rank 2 · LXL04_037980 · OH-1004

Golgi apparatus0.082

Rank 3 · LXL04_037980 · OH-1004

Lysosome / Vacuole0.071

Rank 4 · LXL04_037980 · OH-1004

Cell membrane0.070

Rank 5 · LXL04_037980 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10046.15BLOC1_219-112 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037980	`PF10046.15`	BLOC1_2	19	112	8.5e-27	94.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K657`	Arabidopsis thaliana	Biogenesis of lysosome-related organelles complex 1 subunit 2	56.897%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card