LXL04_037973 | RubberDandelionOmics

Gene overview

LXL04_037973

Reference: OH-1004 Chr: Chr09 Coordinates: 27185442-27186334 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

264 bp · LXL04_037973|LXL04_037973|OH1004|cDNA

ATGAAATCAGTAGATGCTATCATCAACGGTTCCATTTCCGTCTCCTCATCGGATCCCTACCCCTTCTCTTCATCGGCGACCAGGGCTCAGCGGACATGGGAGCTCGCTCCGGTGGCACCATCGATGGCGATGCTATCATTCTCTGGGAGCTCGCTTGATGATCGGATCTTAAGCAAAATGGGTGAAGGTACATTTGGGCAAGTTTTGGAGTGTTTGGACAATGAGAAGAAAGATCCTGTAGCCATTAAAATTGTCCAGAC...

CDS

Download CDS FASTA

264 bp · LXL04_037973|LXL04_037973|OH1004|CDS

ATGAAATCAGTAGATGCTATCATCAACGGTTCCATTTCCGTCTCCTCATCGGATCCCTACCCCTTCTCTTCATCGGCGACCAGGGCTCAGCGGACATGGGAGCTCGCTCCGGTGGCACCATCGATGGCGATGCTATCATTCTCTGGGAGCTCGCTTGATGATCGGATCTTAAGCAAAATGGGTGAAGGTACATTTGGGCAAGTTTTGGAGTGTTTGGACAATGAGAAGAAAGATCCTGTAGCCATTAAAATTGTCCAGAC...

Protein

Download Protein FASTA

87 aa · LXL04_037973|LXL04_037973|OH1004|PROTEIN

MKSVDAIINGSISVSSSDPYPFSSSATRAQRTWELAPVAPSMAMLSFSGSSLDDRILSKMGEGTFGQVLECLDNEKKDPVAIKIVQT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037973`
TK1151 ID	TkA03G398280
OH-1004 ID	LXL04_037973
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	98.900
Protein coverage (%)	TK1151 70.732 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037973

Location Chr09:27185442-27186334 (-)

Description Similar to AFC1: Serine/threonine-protein kinase AFC1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g53570`	Activator of yeast transcription factor, STE12.	No verified direct reference in this release
`At4g24740`	Serine/threonine-protein kinase AFC2.	No verified direct reference in this release
`At4g32660`	Serine/threonine-protein kinase AFC3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037973 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006397 mRNA processing Biological Process

GO:0043484 regulation of RNA splicing Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004712 protein serine/threonine/tyrosine kinase activity Molecular Function

GO:0004713 protein tyrosine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G53570

ath:AT4G24740

ath:AT4G32660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.452

Rank 1 · LXL04_037973 · OH-1004

Nucleus0.414

Rank 2 · LXL04_037973 · OH-1004

Cell membrane0.110

Rank 3 · LXL04_037973 · OH-1004

Mitochondrion0.091

Rank 4 · LXL04_037973 · OH-1004

Endoplasmic reticulum0.082

Rank 5 · LXL04_037973 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P51566`	Arabidopsis thaliana	Serine/threonine-protein kinase AFC1	63.415%	Swiss-Prot	weak database homology
`P51567`	Arabidopsis thaliana	Serine/threonine-protein kinase AFC2	71.875%	Swiss-Prot	weak database homology
`P51568`	Arabidopsis thaliana	Serine/threonine-protein kinase AFC3	35.227%	Swiss-Prot	moderate database homology

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