Gene Card
Gene overview
cDNA / CDS / Protein Sequences
693 bp · LXL04_037963|LXL04_037963|OH1004|cDNA
ATGAAATTCAGTTTCACCGTCTTAACTATGCTTAATTTGCAGAAACTTTTGAATGTGAAGATGATAAGGATTCAGACAGTTTTAACAGCTGCCGTCATATTCTCCTCTCTAATAACAGAGACCTTCGGGATTAGATTTGTAATCGATAGAGAAGAATGTCTATCCCATAATGTTGATTACGAAGGTGATACAGTTCATGTCTCTTTCGTTGTAATTAAGGCTGAATCACCATGGCATTTCTCCGAAGACGGCGTTGATTT...
693 bp · LXL04_037963|LXL04_037963|OH1004|CDS
ATGAAATTCAGTTTCACCGTCTTAACTATGCTTAATTTGCAGAAACTTTTGAATGTGAAGATGATAAGGATTCAGACAGTTTTAACAGCTGCCGTCATATTCTCCTCTCTAATAACAGAGACCTTCGGGATTAGATTTGTAATCGATAGAGAAGAATGTCTATCCCATAATGTTGATTACGAAGGTGATACAGTTCATGTCTCTTTCGTTGTAATTAAGGCTGAATCACCATGGCATTTCTCCGAAGACGGCGTTGATTT...
Protein
Download Protein FASTA230 aa · LXL04_037963|LXL04_037963|OH1004|PROTEIN
MKFSFTVLTMLNLQKLLNVKMIRIQTVLTAAVIFSSLITETFGIRFVIDREECLSHNVDYEGDTVHVSFVVIKAESPWHFSEDGVDFLIKGPDGEHVHDVHARISEKYEFMSQKKGLYHFCFTNKSPYHETVDFDVQVGHFAYYDQHAKDEHFKPLFEEIAKLEEALYNIQFEQHWLQAENDRQAIVNDKMGRRAVHKALIESAALIGASVLQVYLLQRLFERKLGTSRV
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_037963 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_037963 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:26948107-26949896 (-) | |||||||||
| Description | Similar to At3g07680: Transmembrane emp24 domain-containing protein p24beta2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0007029 endoplasmic reticulum organization Biological Process GO:0007030 Golgi organization Biological Process GO:0008104 intracellular protein localization Biological Process GO:0009306 protein secretion Biological Process GO:0010628 positive regulation of gene expression Biological Process GO:0034260 negative regulation of GTPase activity Biological Process GO:0035264 multicellular organism growth Biological Process GO:0036499 PERK-mediated unfolded protein response Biological Process GO:0045879 negative regulation of smoothened signaling pathway Biological Process GO:0048598 embryonic morphogenesis Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT3G07680 ath:AT3G22845 ddi:DDB_G0288053 mmu:56334 nve:5502470 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01105.30EMP24_GP25L50-222 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_037963 | PF01105.30 | EMP24_GP25L | 50 | 222 | 8.8e-34 | 117.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.