LXL04_037886 | RubberDandelionOmics

Gene overview

LXL04_037886

Reference: OH-1004 Chr: Chr09 Coordinates: 24443673-24446693 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1389 bp · LXL04_037886|LXL04_037886|OH1004|cDNA

ATGACCTGTTTGTGTAGCTGCGAATGTGAAGCTATTCAATCATCAATGGCGAAAAAACGAGAAAGACATCAAAATCCAGAACCTTTCTTATCAGATGACACCAACAAATCCGTCTCCAAAAAGCGCACCAAACCCGCTAAACAGCATCAGGGTGAAGAAAAGCTTATATCAGCAGGGATGAGCTCCAAAATTCTAAAAGAGGCTTTAATTCAACAAAAGGAAATACAGGAAGAGACAGATGCTGAAAACCCTAATAACAT...

CDS

Download CDS FASTA

1389 bp · LXL04_037886|LXL04_037886|OH1004|CDS

ATGACCTGTTTGTGTAGCTGCGAATGTGAAGCTATTCAATCATCAATGGCGAAAAAACGAGAAAGACATCAAAATCCAGAACCTTTCTTATCAGATGACACCAACAAATCCGTCTCCAAAAAGCGCACCAAACCCGCTAAACAGCATCAGGGTGAAGAAAAGCTTATATCAGCAGGGATGAGCTCCAAAATTCTAAAAGAGGCTTTAATTCAACAAAAGGAAATACAGGAAGAGACAGATGCTGAAAACCCTAATAACAT...

Protein

Download Protein FASTA

462 aa · LXL04_037886|LXL04_037886|OH1004|PROTEIN

MTCLCSCECEAIQSSMAKKRERHQNPEPFLSDDTNKSVSKKRTKPAKQHQGEEKLISAGMSSKILKEALIQQKEIQEETDAENPNNIVFPEEPVTQTQVEDDDDDVDNFAGFSDNHSQFGGYEEEINEDDERLLEAFFSKDKRPQQTLADVILQKIKQKDNMPPGLAAVLPQIPKLDDSIIEIYKSVGEIFKKYTSGKLPLAFKSIPAKQNWEELLFLTEPEKWSPNAVYQATRILASNMSSSKVTRFYKFVLLPRIRQD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037886`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037886

Location Chr09:24443673-24446693 (-)

Description Similar to ENP1: Bystin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31660`	Essential protein required during embryogenesis and pollen development.	40S ribosome biogenesis co-factors are essential for gametophyte and embryo development.2013 · DOI: 10.1371/journal.pone.0054084

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037886 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process

GO:0006364 rRNA processing Biological Process

GO:0008283 cell population proliferation Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009555 pollen development Biological Process

GO:0042254 ribosome biogenesis Biological Process

GO:1904749 regulation of protein localization to nucleolus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005694 chromosome Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G31660

bta:514128

hsa:705

mbr:MONBRDRAFT_17006

mmu:53414

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.887

Rank 1 · LXL04_037886 · OH-1004

Cytoplasm0.207

Rank 2 · LXL04_037886 · OH-1004

Mitochondrion0.028

Rank 3 · LXL04_037886 · OH-1004

Cell membrane0.028

Rank 4 · LXL04_037886 · OH-1004

Endoplasmic reticulum0.015

Rank 5 · LXL04_037886 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05291.17Bystin144-429 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037886	`PF05291.17`	Bystin	144	429	7.7e-124	413.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8RWS4`	Arabidopsis thaliana	Bystin	58.940%	Swiss-Prot	strong database homology

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