LXL04_037801 | RubberDandelionOmics

Gene overview

LXL04_037801

Reference: OH-1004 Chr: Chr09 Coordinates: 21645501-21647319 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

708 bp · LXL04_037801|LXL04_037801|OH1004|cDNA

ATGGCTGCTTTGGTTTCGCCAGAAACGTTCGAGATTTGCAAGCAAGCTGCTGGAATAGCTGGAAACATATTCGCTTTTGGCCTCTTTGTCTCACCCATACCAACATTTCGAAGAATCATCAGAAACCAATCAACAGAACAATTCTCAGGAATCCCATACATATACGCCCTCTTAAACTGCTTAATCTGTGCCTGGTATGGCTGCCCATTCATCTCTTCAGACAACTTACTGGTTACAACAGTTAATTCTGTTGGTGCGGT...

CDS

Download CDS FASTA

708 bp · LXL04_037801|LXL04_037801|OH1004|CDS

ATGGCTGCTTTGGTTTCGCCAGAAACGTTCGAGATTTGCAAGCAAGCTGCTGGAATAGCTGGAAACATATTCGCTTTTGGCCTCTTTGTCTCACCCATACCAACATTTCGAAGAATCATCAGAAACCAATCAACAGAACAATTCTCAGGAATCCCATACATATACGCCCTCTTAAACTGCTTAATCTGTGCCTGGTATGGCTGCCCATTCATCTCTTCAGACAACTTACTGGTTACAACAGTTAATTCTGTTGGTGCGGT...

Protein

Download Protein FASTA

235 aa · LXL04_037801|LXL04_037801|OH1004|PROTEIN

MAALVSPETFEICKQAAGIAGNIFAFGLFVSPIPTFRRIIRNQSTEQFSGIPYIYALLNCLICAWYGCPFISSDNLLVTTVNSVGAVFQLSYIIIYITNTEKPKKFKMSALLVAVFGLFAVIAVGSMLVIDLELRHLLIGFLSCFTLISMFASPLSVMNVVIQTKSVEFMPFYLSLSTFLMSTSFLLYGVFNFDPFIYVPNGIGTILGIAQLALYFYYHDKSKEESREPLIESVA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037801`
TK1151 ID	TkA04G352380
OH-1004 ID	LXL04_037801
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037801

Location Chr09:21645501-21647319 (+)

Description Similar to SWEET2: Bidirectional sugar transporter SWEET2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14770`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0541800`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`UniProt: A2WR31`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os01g0700100`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037801 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008643 carbohydrate transport Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0042802 identical protein binding Molecular Function

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G14770

dosa:Os01g0541800

dosa:Os01g0700100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.415

Rank 1 · LXL04_037801 · OH-1004

Lysosome / Vacuole0.225

Rank 2 · LXL04_037801 · OH-1004

Endoplasmic reticulum0.187

Rank 3 · LXL04_037801 · OH-1004

Cytoplasm0.122

Rank 4 · LXL04_037801 · OH-1004

Golgi apparatus0.099

Rank 5 · LXL04_037801 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03083.22MtN3_slv18-102 aa

PF03083.22MtN3_slv138-222 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037801	`PF03083.22`	MtN3_slv	18	102	6.9e-42	142.1
LXL04_037801	`PF03083.22`	MtN3_slv	138	222	6.9e-42	142.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LH79`	Arabidopsis thaliana	Bidirectional sugar transporter SWEET2	68.584%	Swiss-Prot	strong database homology
`Q5JJY5`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET2a	58.824%	Swiss-Prot	strong database homology
`A2WR31`	Oryza sativa subsp. indica	Bidirectional sugar transporter SWEET2a	58.824%	Swiss-Prot	strong database homology
`Q5N8J1`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET2b	54.911%	Swiss-Prot	strong database homology

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