LXL04_037716 | RubberDandelionOmics

Gene overview

LXL04_037716

Reference: OH-1004 Chr: Chr09 Coordinates: 19362030-19364300 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1998 bp · LXL04_037716|LXL04_037716|OH1004|cDNA

ATGGCTTCAGGGATATTAGATGCGGACAAGATAAGCAAAGGGAAAAGTAAGTGGGGAGAGGGTAATAAAGTTTACACAAGAAGATTCAAAAGAACCACCAGGaacaccaccgccaccgccaccgccgccgaCGCCGACGCCCCGTCTTCCccaaccaccaccgccaccgctACATCTCCGCCTACTACCAGAACCAACATCTCCAATCCAGCTTCTCCACCCACCACCACAACAAACAACGAGCAAACTCTAGCTACTGA...

CDS

Download CDS FASTA

1998 bp · LXL04_037716|LXL04_037716|OH1004|CDS

ATGGCTTCAGGGATATTAGATGCGGACAAGATAAGCAAAGGGAAAAGTAAGTGGGGAGAGGGTAATAAAGTTTACACAAGAAGATTCAAAAGAACCACCAGGAACACCACCGCCACCGCCACCGCCGCCGACGCCGACGCCCCGTCTTCCCCAACCACCACCGCCACCGCTACATCTCCGCCTACTACCAGAACCAACATCTCCAATCCAGCTTCTCCACCCACCACCACAACAAACAACGAGCAAACTCTAGCTACTGA...

Protein

Download Protein FASTA

665 aa · LXL04_037716|LXL04_037716|OH1004|PROTEIN

MASGILDADKISKGKSKWGEGNKVYTRRFKRTTRNTTATATAADADAPSSPTTTATATSPPTTRTNISNPASPPTTTTNNEQTLATEDANSEKQHTLSPVVELSDDHSVQIAASPNGPTVNGVIKPVVTLVDDRVKINLTAATSKNEIIELRENLLAELNRVRLATQKLEQKEAELTTTFSSVLAIPADVEAYSHSHSQYSGNDLIERRALLRVNSEMGTDFMDRRALMRLNSDIGSAPTTDMRPFRHLNVSVVDNNNSH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037716`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037716

Location Chr09:19362030-19364300 (+)

Description Similar to GTE4: Transcription factor GTE4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g06230`	Involved in the activation and maintenance of cell division in the meristems and by this controls cell numbers in differentiated organs.	The Arabidopsis BET bromodomain factor GTE4 is involved in maintenance of the mitotic cell cycle during plant development.2010 · DOI: 10.1104/pp.109.150631 The Arabidopsis BET bromodomain factor GTE4 regulates the mitotic cell cycle.2010 · DOI: 10.4161/psb.5.6.11571
`At1g73150`	Probable transcription factor that binds to acetylated histone H3.	The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins.2008 · DOI: 10.1074/jbc.m708176200
`At1g17790`	Transcription factor GTE5, chloroplastic.	No verified direct reference in this release
`At5g14270`	Transcription factor GTE9.	No verified direct reference in this release
`At3g27260`	Transcription factor GTE8.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037716 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006338 chromatin remodeling Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009294 DNA-mediated transformation Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0045931 positive regulation of mitotic cell cycle Biological Process

GO:0048364 root development Biological Process

GO:0000785 chromatin Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003682 chromatin binding Molecular Function

KEGG gene cross-reference

ath:AT1G06230

ath:AT1G17790

ath:AT1G73150

ath:AT3G27260

ath:AT5G14270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.978

Rank 1 · LXL04_037716 · OH-1004

Cytoplasm0.089

Rank 2 · LXL04_037716 · OH-1004

Cell membrane0.019

Rank 3 · LXL04_037716 · OH-1004

Endoplasmic reticulum0.010

Rank 4 · LXL04_037716 · OH-1004

Mitochondrion0.007

Rank 5 · LXL04_037716 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00439.31Bromodomain330-415 aa

PF17035.11BET504-565 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037716	`PF00439.31`	Bromodomain	330	415	5.8e-20	71.8
LXL04_037716	`PF17035.11`	BET	504	565	2.8e-23	82.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LNC4`	Arabidopsis thaliana	Transcription factor GTE4	49.247%	Swiss-Prot	moderate database homology
`Q9S7T1`	Arabidopsis thaliana	Transcription factor GTE3, chloroplastic	47.869%	Swiss-Prot	weak database homology
`Q8H1D7`	Arabidopsis thaliana	Transcription factor GTE5, chloroplastic	46.865%	Swiss-Prot	weak database homology
`Q93YS6`	Arabidopsis thaliana	Transcription factor GTE9	34.902%	Swiss-Prot	weak database homology
`Q9LK27`	Arabidopsis thaliana	Transcription factor GTE8	32.927%	Swiss-Prot	weak database homology

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