LXL04_037607 | RubberDandelionOmics

Gene overview

LXL04_037607

Reference: OH-1004 Chr: Chr09 Coordinates: 15751400-15752990 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1119 bp · LXL04_037607|LXL04_037607|OH1004|cDNA

ATGGAGGGCGTTGATGCGAATGATAAGTACGCTAAAGAGTTAGAAATCGGTGTTAGAGTTGTACAGCTCGCTTGTTGTCTATGCCAGAAGGTGCAAAAGGGCTCGATTGGTCCGACGCCTGATCAGATCTTCTCCAAAGATGACGATTCACCTGTTACTGTCGCCGATTGGAGTGTACAAGCGATGATAAGCTGGATTCTATCAGAATCATTCGGTAAACAAAACGTCTCGATTGTAGCTGAAGAAGACACACAAACTTT...

CDS

Download CDS FASTA

1119 bp · LXL04_037607|LXL04_037607|OH1004|CDS

ATGGAGGGCGTTGATGCGAATGATAAGTACGCTAAAGAGTTAGAAATCGGTGTTAGAGTTGTACAGCTCGCTTGTTGTCTATGCCAGAAGGTGCAAAAGGGCTCGATTGGTCCGACGCCTGATCAGATCTTCTCCAAAGATGACGATTCACCTGTTACTGTCGCCGATTGGAGTGTACAAGCGATGATAAGCTGGATTCTATCAGAATCATTCGGTAAACAAAACGTCTCGATTGTAGCTGAAGAAGACACACAAACTTT...

Protein

Download Protein FASTA

372 aa · LXL04_037607|LXL04_037607|OH1004|PROTEIN

MEGVDANDKYAKELEIGVRVVQLACCLCQKVQKGSIGPTPDQIFSKDDDSPVTVADWSVQAMISWILSESFGKQNVSIVAEEDTQTLSDSNSTRLLSSVVSTVNESLSIAPKFGLKAPTSPLEPTQVLDAINNCNSTGGPTGKHWVLDPVDGTLGFVRGDQYAVALALIENGQVVVGVLGCPNYSSKKKLVNNSSVSKEGCVMYARKGSGEAWMQPLVCEGGGPALVWPNSGSRIRVSCIDDPSMATFCEPVEKANSNHS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037607`
TK1151 ID	TkA04G328880
OH-1004 ID	LXL04_037607
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037607

Location Chr09:15751400-15752990 (+)

Description Similar to AHL: PAP-specific phosphatase HAL2-like

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54390`	Phosphatase that converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'-phosphoadenosine 5'-phosphate (3'-PAP) to AMP.	No verified direct reference in this release
`At5g63980`	Phosphatase that converts adenosine 3'-phosphate 5'- phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')- phosphoadenosine 5'-phosphate (PAP) to AMP.	FIERY1 encoding an inositol polyphosphate 1-phosphatase is a negative regulator of abscisic acid and stress signaling in Arabidopsis.2001 · DOI: 10.1101/gad.891901 Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors.2007 · DOI: 10.1105/tpc.107.055319 The SAL1 gene of Arabidopsis, encoding an enzyme with 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities, increases salt tolerance in yeast.1996 · DOI: 10.1105/tpc.8.3.529
`At5g09290`	Phosphatase that converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'-phosphate (PAP) to AMP.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0183300`	Phosphatase that converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'-phosphate (PAP) to AMP.	No verified direct reference in this release
`UniProt: P0C5A3`	Phosphatase that converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'-phosphate (PAP) to AMP.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037607 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000103 sulfate assimilation Biological Process

GO:0006401 RNA catabolic process Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009968 negative regulation of signal transduction Biological Process

GO:0010587 miRNA catabolic process Biological Process

GO:0042752 regulation of circadian rhythm Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT5G09290

ath:AT5G54390

ath:AT5G63980

dosa:Os12g0183300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.721

Rank 1 · LXL04_037607 · OH-1004

Nucleus0.397

Rank 2 · LXL04_037607 · OH-1004

Peroxisome0.080

Rank 3 · LXL04_037607 · OH-1004

Lysosome / Vacuole0.049

Rank 4 · LXL04_037607 · OH-1004

Mitochondrion0.048

Rank 5 · LXL04_037607 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00459.31Inositol_P49-342 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037607	`PF00459.31`	Inositol_P	49	342	2.4e-43	149.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38945`	Arabidopsis thaliana	3',5'-bisphosphate nucleotidase AHL	65.172%	Swiss-Prot	strong database homology
`Q42546`	Arabidopsis thaliana	3'(2'),5'-bisphosphate nucleotidase 1	44.928%	Swiss-Prot	moderate database homology
`Q84VY5`	Arabidopsis thaliana	Probable 3'(2'),5'-bisphosphate nucleotidase 4	42.700%	Swiss-Prot	moderate database homology
`Q2QWT4`	Oryza sativa subsp. japonica	3'(2'),5'-bisphosphate nucleotidase	43.713%	Swiss-Prot	moderate database homology
`P0C5A3`	Oryza sativa	3'(2'),5'-bisphosphate nucleotidase	43.713%	Swiss-Prot	moderate database homology

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