LXL04_037494 | RubberDandelionOmics

Gene overview

LXL04_037494

Reference: OH-1004 Chr: Chr09 Coordinates: 12196193-12200736 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1440 bp · LXL04_037494|LXL04_037494|OH1004|cDNA

ATGGTTTCGAGTGCCAAAATCAAATCTGTCGATTTCTACAGGAAAATTCCAAGAGATTTGACAGAGGCGTCACTGTCAGGTGCCGGCTTGTCTATCATTGCAGCTGTTTCCATGATGTTTTTATTTGGAATGGAGCTACATAATTATTTGTCCATCAGTACCTCGACATCTGTCATAGTTGACAGAAGTTCAGATGCTGATTACTTACGGATTGATTTTAATATTAGTTTTCCAGCATTGTCCTGTGAGTTTGCATCTGT...

CDS

Download CDS FASTA

1440 bp · LXL04_037494|LXL04_037494|OH1004|CDS

ATGGTTTCGAGTGCCAAAATCAAATCTGTCGATTTCTACAGGAAAATTCCAAGAGATTTGACAGAGGCGTCACTGTCAGGTGCCGGCTTGTCTATCATTGCAGCTGTTTCCATGATGTTTTTATTTGGAATGGAGCTACATAATTATTTGTCCATCAGTACCTCGACATCTGTCATAGTTGACAGAAGTTCAGATGCTGATTACTTACGGATTGATTTTAATATTAGTTTTCCAGCATTGTCCTGTGAGTTTGCATCTGT...

Protein

Download Protein FASTA

479 aa · LXL04_037494|LXL04_037494|OH1004|PROTEIN

MVSSAKIKSVDFYRKIPRDLTEASLSGAGLSIIAAVSMMFLFGMELHNYLSISTSTSVIVDRSSDADYLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKYSINKHLQTIGSEFDSGPVTNMVKHDDEVDEEYGEGSVALTGRNFDKFSHQHSILVVNFFAPWCYWSNRLKPSWEKAAKIIRERHDPEIDGRIIMGRVDCTEEVDLCRRHHIQGYPSIRIFRKGSDVRDEHGHHEHESYYGDRDTDTLVNTMEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037494`
TK1151 ID	TkA04G313880
OH-1004 ID	LXL04_037494
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037494

Location Chr09:12196193-12200736 (+)

Description Similar to PDIL5-4: Protein disulfide isomerase-like 5-4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g27080`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	No verified direct reference in this release
`At3g20560`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0524100`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037494 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process

GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0030134 COPII-coated ER to Golgi transport vesicle Cellular Component

GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane Cellular Component

GO:0003756 protein disulfide isomerase activity Molecular Function

KEGG gene cross-reference

ath:AT3G20560

ath:AT4G27080

dosa:Os07g0524100

dre:393990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.527

Rank 1 · LXL04_037494 · OH-1004

Golgi apparatus0.489

Rank 2 · LXL04_037494 · OH-1004

Cytoplasm0.111

Rank 3 · LXL04_037494 · OH-1004

Cell membrane0.068

Rank 4 · LXL04_037494 · OH-1004

Nucleus0.067

Rank 5 · LXL04_037494 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13850.12ERGIC_N7-97 aa

PF00085.27Thioredoxin144-243 aa

PF07970.18COPIIcoated_ERV288-460 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037494	`PF13850.12`	ERGIC_N	7	97	3.7e-23	82.2
LXL04_037494	`PF00085.27`	Thioredoxin	144	243	3.5e-16	59.8
LXL04_037494	`PF07970.18`	COPIIcoated_ERV	288	460	1.3e-29	104.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9T042`	Arabidopsis thaliana	Protein disulfide-isomerase 5-4	70.478%	Swiss-Prot	strong database homology
`Q9LJU2`	Arabidopsis thaliana	Protein disulfide-isomerase 5-3	69.772%	Swiss-Prot	strong database homology
`Q69SA9`	Oryza sativa subsp. japonica	Protein disulfide isomerase-like 5-4	72.727%	Swiss-Prot	strong database homology

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