Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2751 bp · LXL04_037361|LXL04_037361|OH1004|cDNA
ATGGAATTCAAAGCGCGCGATTACAGAGACGATGACAAACTCTATTCACTCAACCGAGTTTCGGTTTCTTCGCATCCTCTGTGTTCGTCTCCGTCTAAATCCTTATCACATACGCAGGATCATGGGAGCATTGAATTTTTTGATCCATTAAGGGAAGTATCAACAGAAATCTTGGAGCCTGTTGAAGATATAGCTGTTGCAGAAAAGCATCCTGCTAGTCGACAAACCTCCCATCTCTCTTCAAAGGAGTGGTCATCTTT...
2751 bp · LXL04_037361|LXL04_037361|OH1004|CDS
ATGGAATTCAAAGCGCGCGATTACAGAGACGATGACAAACTCTATTCACTCAACCGAGTTTCGGTTTCTTCGCATCCTCTGTGTTCGTCTCCGTCTAAATCCTTATCACATACGCAGGATCATGGGAGCATTGAATTTTTTGATCCATTAAGGGAAGTATCAACAGAAATCTTGGAGCCTGTTGAAGATATAGCTGTTGCAGAAAAGCATCCTGCTAGTCGACAAACCTCCCATCTCTCTTCAAAGGAGTGGTCATCTTT...
Protein
Download Protein FASTA916 aa · LXL04_037361|LXL04_037361|OH1004|PROTEIN
MEFKARDYRDDDKLYSLNRVSVSSHPLCSSPSKSLSHTQDHGSIEFFDPLREVSTEILEPVEDIAVAEKHPASRQTSHLSSKEWSSFNKLLMQRFPVPKMISVSSVTSKTIKGSKATVELPANTQSDELNDSQKLTEGGFKTVSQQEFIKRLHELKDEIMRSWQSDDRVTTLKLSIKVARLLMDTSVAQFYPTLFVLATDIMDMLGDMVWDRIKQKAEFGDDGTKICSLSDDFDANSICFEAKETCTNWFRKIASVHDLL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_037361 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_037361 |
|---|---|
| Location | Chr09:8024604-8033935 (+) |
| Description | Similar to DDB_G0273473: VPS35 endosomal protein sorting factor-like |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006893 Golgi to plasma membrane transport Biological Process GO:0015031 protein transport Biological Process GO:0032456 endocytic recycling Biological Process GO:0005768 endosome Cellular Component GO:0005886 plasma membrane Cellular Component GO:0010008 endosome membrane Cellular Component GO:0016020 membrane Cellular Component GO:0032991 protein-containing complex Cellular Component |
| KEGG gene cross-reference | ddi:DDB_G0273473 ddi:DDB_G0273559 dre:563454 hsa:57020 mmu:71517 pon:100173041 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF27614.1VPS35L_N83-356 aaPF30377.1VPS35L_C401-908 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_037361 | PF27614.1 | VPS35L_N | 83 | 356 | 1.1e-100 | 337.1 |
| LXL04_037361 | PF30377.1 | VPS35L_C | 401 | 908 | 1.1e-63 | 216.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.