LXL04_037278 | RubberDandelionOmics

Gene overview

LXL04_037278

Reference: OH-1004 Chr: Chr09 Coordinates: 4932737-4933847 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

606 bp · LXL04_037278|LXL04_037278|OH1004|cDNA

ATGAGCAACGGCGGCGAGTGTAGATACGTGATCGGTCAAAATGCTTACATCAAGCTGATCCTTCATGCCTTGAAGCACAAAACATCCGCCGTTAACGGTGTCCTCCTCGGCCGTCTTTCCGGCGATATAGTGGAAATCACCGACTCAGTCCCTCTTTTCCACTCTTCTCAGATCGGGCTTCTCCCTCCTCTAGAGATCGCCTTAATTATGATTGAAGAGTATTACAGCTCACAGGGACTGAGTATAGTTGGGTATTTCCA...

CDS

Download CDS FASTA

606 bp · LXL04_037278|LXL04_037278|OH1004|CDS

ATGAGCAACGGCGGCGAGTGTAGATACGTGATCGGTCAAAATGCTTACATCAAGCTGATCCTTCATGCCTTGAAGCACAAAACATCCGCCGTTAACGGTGTCCTCCTCGGCCGTCTTTCCGGCGATATAGTGGAAATCACCGACTCAGTCCCTCTTTTCCACTCTTCTCAGATCGGGCTTCTCCCTCCTCTAGAGATCGCCTTAATTATGATTGAAGAGTATTACAGCTCACAGGGACTGAGTATAGTTGGGTATTTCCA...

Protein

Download Protein FASTA

201 aa · LXL04_037278|LXL04_037278|OH1004|PROTEIN

MSNGGECRYVIGQNAYIKLILHALKHKTSAVNGVLLGRLSGDIVEITDSVPLFHSSQIGLLPPLEIALIMIEEYYSSQGLSIVGYFHANERFDDLELGTVAKNIADHVYRYFPQAAVLLLDNKKLGALRNKKDKAPVLQIYTRDSSKSWKQAEADRMTTKEPSANIVLLDYTSSEKWNDIVDFDDHLDDISKDWLNSELFK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037278`
TK1151 ID	TkA04G267350
OH-1004 ID	LXL04_037278
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_037278

Location Chr09:4932737-4933847 (+)

Description Similar to EMB2731: ER membrane protein complex subunit 8/9 homolog

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55940`	ER membrane protein complex subunit 8/9 homolog.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037278 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence Biological Process

GO:0071816 tail-anchored membrane protein insertion into ER membrane Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0072546 EMC complex Cellular Component

GO:0032977 membrane insertase activity Molecular Function

KEGG gene cross-reference

ath:AT5G55940

dme:Dmel_CG3501

mmu:85308

rno:290224

rno:361425

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.618

Rank 1 · LXL04_037278 · OH-1004

Nucleus0.515

Rank 2 · LXL04_037278 · OH-1004

Lysosome / Vacuole0.050

Rank 3 · LXL04_037278 · OH-1004

Endoplasmic reticulum0.049

Rank 4 · LXL04_037278 · OH-1004

Golgi apparatus0.048

Rank 5 · LXL04_037278 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03665.19UPF01729-199 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037278	`PF03665.19`	UPF0172	9	199	2.3e-62	211.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FG71`	Arabidopsis thaliana	ER membrane protein complex subunit 8/9 homolog	64.563%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card