LXL04_037131 | RubberDandelionOmics

Gene overview

LXL04_037131

Reference: OH-1004 Chr: Chr08 Coordinates: 53776436-53778229 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1794 bp · LXL04_037131|LXL04_037131|OH1004|cDNA

atgGCTAATCATTTAGTACAAGCTGTGTTATCATTAGGGTTATCAATCGTTGTTATTCTTTGCATAGTTGCTTTGGTGGCTAGAAATGGATATTTGGACGACGATGAATTAATGAACACCAAGGCAGTTTACACCATGTGCAAACCAACCGAGTACAAAGATGAATGCAAAGAGGCATTAAAGGAGGTGTCATTGAACGCCTCATCCACCAAAAAAGATTACATATTCGCACCCTTTTATAGCATCCTCAAGGAACTCCA...

CDS

Download CDS FASTA

1794 bp · LXL04_037131|LXL04_037131|OH1004|CDS

ATGGCTAATCATTTAGTACAAGCTGTGTTATCATTAGGGTTATCAATCGTTGTTATTCTTTGCATAGTTGCTTTGGTGGCTAGAAATGGATATTTGGACGACGATGAATTAATGAACACCAAGGCAGTTTACACCATGTGCAAACCAACCGAGTACAAAGATGAATGCAAAGAGGCATTAAAGGAGGTGTCATTGAACGCCTCATCCACCAAAAAAGATTACATATTCGCACCCTTTTATAGCATCCTCAAGGAACTCCA...

Protein

Download Protein FASTA

597 aa · LXL04_037131|LXL04_037131|OH1004|PROTEIN

MANHLVQAVLSLGLSIVVILCIVALVARNGYLDDDELMNTKAVYTMCKPTEYKDECKEALKEVSLNASSTKKDYIFAPFYSILKELQKGIDKASSSNLNNCEKLLGRAAEELNQVLKVANKTKIAKVADQADPILIFLTAVRAYQTTCIDEIPDGSLKKDMNKTLEGALINTFNAEKITYNIADILLEFGVDLGNFHFGHRRLLEEEEEEAVVDSPAWFSAADRTLLGGGGGDDKDDDDEDGEDDDKKKKDGYFKKPTCE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037131`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037131

Location Chr08:53776436-53778229 (-)

Description Similar to BP19: Probable pectinesterase/pectinesterase inhibitor

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33230`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At2g26450`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At2g47040`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	VANGUARD1 encodes a pectin methylesterase that enhances pollen tube growth in the Arabidopsis style and transmitting tract.2005 · DOI: 10.1105/tpc.104.027631

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037131 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009860 pollen tube growth Biological Process

GO:0042545 cell wall modification Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

GO:0030599 pectinesterase activity Molecular Function

GO:0046910 pectinesterase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT2G26450

ath:AT2G47040

ath:AT4G33230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.396

Rank 1 · LXL04_037131 · OH-1004

Cell membrane0.193

Rank 2 · LXL04_037131 · OH-1004

Lysosome / Vacuole0.179

Rank 3 · LXL04_037131 · OH-1004

Endoplasmic reticulum0.159

Rank 4 · LXL04_037131 · OH-1004

Cytoplasm0.123

Rank 5 · LXL04_037131 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04043.21PMEI42-165 aa

PF01095.26Pectinesterase285-580 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037131	`PF04043.21`	PMEI	42	165	3.2e-11	44.3
LXL04_037131	`PF01095.26`	Pectinesterase	285	580	1.1e-94	317.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SMY6`	Arabidopsis thaliana	Putative pectinesterase/pectinesterase inhibitor 45	33.046%	Swiss-Prot	moderate database homology
`Q7Y201`	Arabidopsis thaliana	Probable pectinesterase/pectinesterase inhibitor 13	32.186%	Swiss-Prot	moderate database homology
`Q5MFV8`	Arabidopsis thaliana	Pectinesterase 5	30.663%	Swiss-Prot	moderate database homology

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