LXL04_037107 | RubberDandelionOmics

Gene overview

LXL04_037107

Reference: OH-1004 Chr: Chr08 Coordinates: 53321438-53323340 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1701 bp · LXL04_037107|LXL04_037107|OH1004|cDNA

ATGAACCctctttttattttaaaaaagaaaaaaaaaacctcTGATCTCGAACGAGAACCGGGTTACATCAAACCGACCAAATACGCCGGCGGAAAGGCAAGAGAGAGGATGATGATTTTCCGATGCCGGAGCCGGATATCAATCGCTAAAACGTCGACGCTGCTCAGAATGTTTTGTACGGTGGTGGAAGCACCAAATGCTGCCGCCGAGGCTGTGTTGCCGCCACTTAAAGAATCCGCAAATGAAAAGCGGCTATACAG...

CDS

Download CDS FASTA

1701 bp · LXL04_037107|LXL04_037107|OH1004|CDS

ATGAACCCTCTTTTTATTTTAAAAAAGAAAAAAAAAACCTCTGATCTCGAACGAGAACCGGGTTACATCAAACCGACCAAATACGCCGGCGGAAAGGCAAGAGAGAGGATGATGATTTTCCGATGCCGGAGCCGGATATCAATCGCTAAAACGTCGACGCTGCTCAGAATGTTTTGTACGGTGGTGGAAGCACCAAATGCTGCCGCCGAGGCTGTGTTGCCGCCACTTAAAGAATCCGCAAATGAAAAGCGGCTATACAG...

Protein

Download Protein FASTA

566 aa · LXL04_037107|LXL04_037107|OH1004|PROTEIN

MNPLFILKKKKKTSDLEREPGYIKPTKYAGGKARERMMIFRCRSRISIAKTSTLLRMFCTVVEAPNAAAEAVLPPLKESANEKRLYRRLSALGATGGTVPQTLNQYIREGNFIKKVELERCIRELRRYGKYQHALESKLGLIFYCSTVYGFLTATKVMEWMDKRDINFSNTDMAVRLDLISKVHGVGAAERYFHDLSPHLHNRNTYGALLNCYCKLKMTDKALALFKEIEAKNFTTSLAFNNLMTLYMGLEQPEKVAPLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037107`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037107

Location Chr08:53321438-53323340 (+)

Description Similar to At1g02370: Pentatricopeptide repeat-containing protein At1g02370, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g02370`	Pentatricopeptide repeat-containing protein At1g02370, mitochondrial.	No verified direct reference in this release
`At4g01990`	Pentatricopeptide repeat-containing protein At4g01990, mitochondrial.	No verified direct reference in this release
`At1g60770`	Large ribosomal subunit protein mL101 (rPPR4).	No verified direct reference in this release
`At1g02150`	Pentatricopeptide repeat-containing protein At1g02150.	No verified direct reference in this release
`At4g21705`	Pentatricopeptide repeat-containing protein At4g21705, mitochondrial.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037107 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:1902775 mitochondrial large ribosomal subunit assembly Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005840 ribosome Cellular Component

GO:0009507 chloroplast Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0140978 mitochondrial large ribosomal subunit binding Molecular Function

KEGG gene cross-reference

ath:AT1G02150

ath:AT1G02370

ath:AT1G60770

ath:AT4G01990

ath:AT4G21705

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.824

Rank 1 · LXL04_037107 · OH-1004

Plastid0.110

Rank 2 · LXL04_037107 · OH-1004

Nucleus0.062

Rank 3 · LXL04_037107 · OH-1004

Cytoplasm0.044

Rank 4 · LXL04_037107 · OH-1004

Cell membrane0.013

Rank 5 · LXL04_037107 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535.27PPR205-233 aa

PF13041.13PPR_2238-282 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037107	`PF01535.27`	PPR	205	233	5.3e-26	89.7
LXL04_037107	`PF13041.13`	PPR_2	238	282	2.1e-25	89.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ24`	Arabidopsis thaliana	Pentatricopeptide repeat-containing protein At1g02370, mitochondrial	40.364%	Swiss-Prot	moderate database homology
`Q93WC5`	Arabidopsis thaliana	Pentatricopeptide repeat-containing protein At4g01990, mitochondrial	41.586%	Swiss-Prot	moderate database homology
`O22714`	Arabidopsis thaliana	Large ribosomal subunit protein mL101 (rPPR4)	35.845%	Swiss-Prot	moderate database homology
`Q8LPS6`	Arabidopsis thaliana	Pentatricopeptide repeat-containing protein At1g02150	33.333%	Swiss-Prot	moderate database homology
`Q84JR3`	Arabidopsis thaliana	Pentatricopeptide repeat-containing protein At4g21705, mitochondrial	30.851%	Swiss-Prot	moderate database homology

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