LXL04_036992 | RubberDandelionOmics

Gene overview

LXL04_036992

Reference: OH-1004 Chr: Chr08 Coordinates: 51357370-51358368 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

999 bp · LXL04_036992|LXL04_036992|OH1004|cDNA

ATGAATATGACAATGATGATGACGTGCCACCAAGCCCAGCCATCTTTATTGCAGATACCCACCGGCGGAATAGACTTATCGGTGCTCCGGTGCCGGCCACAGAAAGAAAAAGTAGTGGTGGTTATGGGTGCTACCGGTACCGGAAAATCAAGGCTATCTATCGACCTCGCCGGAAGTTACCCTGCCGAGATTATAAACTCCGATAAAATGCAAGTATACGAAGGTTTAGACATCGTCACCAACAAAATCACTGACGATGA...

CDS

Download CDS FASTA

999 bp · LXL04_036992|LXL04_036992|OH1004|CDS

ATGAATATGACAATGATGATGACGTGCCACCAAGCCCAGCCATCTTTATTGCAGATACCCACCGGCGGAATAGACTTATCGGTGCTCCGGTGCCGGCCACAGAAAGAAAAAGTAGTGGTGGTTATGGGTGCTACCGGTACCGGAAAATCAAGGCTATCTATCGACCTCGCCGGAAGTTACCCTGCCGAGATTATAAACTCCGATAAAATGCAAGTATACGAAGGTTTAGACATCGTCACCAACAAAATCACTGACGATGA...

Protein

Download Protein FASTA

332 aa · LXL04_036992|LXL04_036992|OH1004|PROTEIN

MNMTMMMTCHQAQPSLLQIPTGGIDLSVLRCRPQKEKVVVVMGATGTGKSRLSIDLAGSYPAEIINSDKMQVYEGLDIVTNKITDDECDGVPHHLLGIVSPEADFTARNFVSTASITMKSIVGRGKLPIIAGGSNSFIEALIDDQNYEFRSRYEVCFLWVDVAMPILHRFVSDRVDRMVAAGIVEEVRKMYNPNADYSKGIRRAIGVPEFHEYFRSEYSSSVDKKTQAKLLQEAINQTKINSCKLACRQLEKIHRLRNVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036992`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036992

Location Chr08:51357370-51358368 (+)

Description Similar to IPT3: Adenylate isopentenyltransferase 3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63110`	Involved in cytokinin biosynthesis.	No verified direct reference in this release
`At5g19040`	Involved in cytokinin biosynthesis.	No verified direct reference in this release
`At3g23630`	Involved in cytokinin biosynthesis.	No verified direct reference in this release
`At1g68460`	Involved in cytokinin biosynthesis.	Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis.2006 · DOI: 10.1073/pnas.0603522103

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036992 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006400 tRNA modification Biological Process

GO:0009691 cytokinin biosynthetic process Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0034265 isopentenyl adenine biosynthetic process Biological Process

GO:0080117 secondary growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0031965 nuclear membrane Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0009824 AMP dimethylallyltransferase activity Molecular Function

KEGG gene cross-reference

ag:AAS94327

ath:AT1G68460

ath:AT3G23630

ath:AT3G63110

ath:AT5G19040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.812

Rank 1 · LXL04_036992 · OH-1004

Mitochondrion0.160

Rank 2 · LXL04_036992 · OH-1004

Nucleus0.071

Rank 3 · LXL04_036992 · OH-1004

Cytoplasm0.068

Rank 4 · LXL04_036992 · OH-1004

Peroxisome0.022

Rank 5 · LXL04_036992 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01745.23IPT37-187 aa

PF01715.24IPPT71-144 aa

PF01715.24IPPT148-251 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036992	`PF01745.23`	IPT	37	187	7.1e-08	32.9
LXL04_036992	`PF01715.24`	IPPT	71	144	5.6e-38	131.7
LXL04_036992	`PF01715.24`	IPPT	148	251	5.6e-38	131.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93WC9`	Arabidopsis thaliana	Adenylate isopentenyltransferase 3, chloroplastic	52.812%	Swiss-Prot	strong database homology
`Q94ID2`	Arabidopsis thaliana	Adenylate isopentenyltransferase 5, chloroplastic	55.405%	Swiss-Prot	strong database homology
`Q94ID1`	Arabidopsis thaliana	Adenylate isopentenyltransferase 7, mitochondrial	54.779%	Swiss-Prot	strong database homology
`Q94ID3`	Arabidopsis thaliana	Adenylate isopentenyltransferase 1, chloroplastic	45.545%	Swiss-Prot	moderate database homology

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