LXL04_036879 | RubberDandelionOmics

Gene overview

LXL04_036879

Reference: OH-1004 Chr: Chr08 Coordinates: 49698012-49705324 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2628 bp · LXL04_036879|LXL04_036879|OH1004|cDNA

ATGGCTCTGCTTGTTTCAACTTGGTCTAATGGAGTTCAATCCGTTCCTCAAGATTACATTATGCCACCCGAAAGAAGACCCGGCGATTTCATTACAGTTTGCAAGGATATTCCGGTGATCGATCTTCAAAACGATCGGTCTGAGATCGTCCAACAAATTTTCAAAGCTTGTCAAGAATTCGGCTTATTTCAGGTGATCAATCATGGAGTACCGGAGGAACTGATGGCGGATATTAGGGCTTTGTACGACGAGTTCTTTAA...

CDS

Download CDS FASTA

2628 bp · LXL04_036879|LXL04_036879|OH1004|CDS

ATGGCTCTGCTTGTTTCAACTTGGTCTAATGGAGTTCAATCCGTTCCTCAAGATTACATTATGCCACCCGAAAGAAGACCCGGCGATTTCATTACAGTTTGCAAGGATATTCCGGTGATCGATCTTCAAAACGATCGGTCTGAGATCGTCCAACAAATTTTCAAAGCTTGTCAAGAATTCGGCTTATTTCAGGTGATCAATCATGGAGTACCGGAGGAACTGATGGCGGATATTAGGGCTTTGTACGACGAGTTCTTTAA...

Protein

Download Protein FASTA

875 aa · LXL04_036879|LXL04_036879|OH1004|PROTEIN

MALLVSTWSNGVQSVPQDYIMPPERRPGDFITVCKDIPVIDLQNDRSEIVQQIFKACQEFGLFQVINHGVPEELMADIRALYDEFFNMPIEDKLSVYSEKFGKGCKLYTSGLNYAEEDVHYWKDTLKHDCHPFEEHSPSWPDKPARYQEVGRYVVEVRKMGLKVIDIIGEGLGLAEGYLAKVSKEQSMAVNHYPPCPDPTLAMGTGGHSDPNLITLLQQDRYGLQIQKDGKWMGVDPIPNAFVFNLGYLLKAISNDKFKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036879`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036879

Location Chr08:49698012-49705324 (-)

Description Similar to H6H: Hyoscyamine 6-dioxygenase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24530`	Converts salicylic acid (SA) to 2,3-dihydroxybenzoic acid (2,3-DHBA) (By similarity).	Identification of arabidopsis loci required for susceptibility to the downy mildew pathogen Hyaloperonospora parasitica.2005 · DOI: 10.1094/mpmi-18-0583 Arabidopsis DMR6 encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.2008 · DOI: 10.1111/j.1365-313x.2008.03427.x DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.2015 · DOI: 10.1111/tpj.12719
`At4g10490`	Converts salicylic acid (SA) to 2,3-dihydroxybenzoic acid (2,3-DHBA) (By similarity).	DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.2015 · DOI: 10.1111/tpj.12719

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0536400`	Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R- dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants.	Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis.2008 · DOI: 10.1016/s1016-8478(23)17587-x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036879 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0009805 coumarin biosynthetic process Biological Process

GO:0031418 L-ascorbic acid binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0047998 hyoscyamine (6S)-dioxygenase activity Molecular Function

KEGG gene cross-reference

ag:BAA05630

ag:BAA78340

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.838

Rank 1 · LXL04_036879 · OH-1004

Nucleus0.245

Rank 2 · LXL04_036879 · OH-1004

Mitochondrion0.052

Rank 3 · LXL04_036879 · OH-1004

Endoplasmic reticulum0.052

Rank 4 · LXL04_036879 · OH-1004

Cell membrane0.049

Rank 5 · LXL04_036879 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226.13DIOX_N37-141 aa

PF03171.272OG-FeII_Oxy185-282 aa

PF14226.13DIOX_N345-445 aa

PF03171.272OG-FeII_Oxy494-591 aa

PF14226.13DIOX_N612-690 aa

PF03171.272OG-FeII_Oxy734-830 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036879	`PF14226.13`	DIOX_N	37	141	7.7e-60	201.4
LXL04_036879	`PF03171.27`	2OG-FeII_Oxy	185	282	1.7e-89	295.4
LXL04_036879	`PF14226.13`	DIOX_N	345	445	7.7e-60	201.4
LXL04_036879	`PF03171.27`	2OG-FeII_Oxy	494	591	1.7e-89	295.4
LXL04_036879	`PF14226.13`	DIOX_N	612	690	7.7e-60	201.4
LXL04_036879	`PF03171.27`	2OG-FeII_Oxy	734	830	1.7e-89	295.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLV0`	Arabidopsis thaliana	Protein DOWNY MILDEW RESISTANCE 6	43.478%	Swiss-Prot	weak database homology
`Q9ZSA7`	Arabidopsis thaliana	Protein DMR6-LIKE OXYGENASE 2	40.984%	Swiss-Prot	weak database homology
`Q8W2X5`	Oryza sativa subsp. japonica	Flavanone 3-dioxygenase 2	40.850%	Swiss-Prot	weak database homology

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