LXL04_036806 | RubberDandelionOmics

Gene overview

LXL04_036806

Reference: OH-1004 Chr: Chr08 Coordinates: 48634023-48635040 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

408 bp · LXL04_036806|LXL04_036806|OH1004|cDNA

ATGGTAAGCTGCAGCATGGCATTTGCTGCCACTGGCTTTGTGGTTGCACCAAATGTTACCTCTAACTCAACCACAGTTAAGTGCACCATGGTTAACTTTTCATCATCCAAGAACACCAAGAGTTCAAGACTGGTGGTTGTAAAGGCTGCTGACGAGGCGCCGGCAGCGGCACCACCGGCTGCCACCAAAGAAGCTGCACCAAAGCCACCTCCGATTGGTCCCAAGAGAGGGTCCAAGGTGAGAATTCTCCGTAAGGAGTC...

CDS

Download CDS FASTA

408 bp · LXL04_036806|LXL04_036806|OH1004|CDS

ATGGTAAGCTGCAGCATGGCATTTGCTGCCACTGGCTTTGTGGTTGCACCAAATGTTACCTCTAACTCAACCACAGTTAAGTGCACCATGGTTAACTTTTCATCATCCAAGAACACCAAGAGTTCAAGACTGGTGGTTGTAAAGGCTGCTGACGAGGCGCCGGCAGCGGCACCACCGGCTGCCACCAAAGAAGCTGCACCAAAGCCACCTCCGATTGGTCCCAAGAGAGGGTCCAAGGTGAGAATTCTCCGTAAGGAGTC...

Protein

Download Protein FASTA

135 aa · LXL04_036806|LXL04_036806|OH1004|PROTEIN

MVSCSMAFAATGFVVAPNVTSNSTTVKCTMVNFSSSKNTKSSRLVVVKAADEAPAAAPPAATKEAAPKPPPIGPKRGSKVRILRKESYWFKGVGSVVTIDQGPKTRYPVVVRFNKVNYANVSTNNYALGEIQEVV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036806`
TK1151 ID	TkA04G023840
OH-1004 ID	LXL04_036806
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036806

Location Chr08:48634023-48635040 (+)

Description Similar to PSAEA: Photosystem I reaction center subunit IV A, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20260`	Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036806 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015979 photosynthesis Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009538 photosystem I reaction center Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0019904 protein domain specific binding Molecular Function

GO:0051219 phosphoprotein binding Molecular Function

KEGG gene cross-reference

ath:AT2G20260

nsy:104216219

nsy:104243298

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.984

Rank 1 · LXL04_036806 · OH-1004

Mitochondrion0.022

Rank 2 · LXL04_036806 · OH-1004

Nucleus0.013

Rank 3 · LXL04_036806 · OH-1004

Cytoplasm0.010

Rank 4 · LXL04_036806 · OH-1004

Cell membrane0.008

Rank 5 · LXL04_036806 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02427.24PSI_PsaE75-134 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036806	`PF02427.24`	PSI_PsaE	75	134	4.2e-30	103.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S714`	Arabidopsis thaliana	Photosystem I reaction center subunit IV B, chloroplastic	50.000%	Swiss-Prot	strong database homology

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