Gene Card
Gene overview
cDNA / CDS / Protein Sequences
270 bp · LXL04_036721|LXL04_036721|OH1004|cDNA
ATGTTTAATTTCAGTGAAGAGGCTGTTGTACCAGTTGAGGCACCTGTTGCCACCCCTGCTGCTCTTGGTGAACCAATGGACATCATGACTACATTACAACTCGTTCTAAGAAAGTCACTTGCTCATGGAGGTCTTGTGAGAGGTCTTCATGAGGCTGCTAAAGTTATTGAGAAACATGCTGCTCTTCTTTGTGTCTTAGCAGAGGACTGTAACCAGCCAGACTATCAAAAACTGGTCAAAGCTCTTTGTGCTGACCATAT...
270 bp · LXL04_036721|LXL04_036721|OH1004|CDS
ATGTTTAATTTCAGTGAAGAGGCTGTTGTACCAGTTGAGGCACCTGTTGCCACCCCTGCTGCTCTTGGTGAACCAATGGACATCATGACTACATTACAACTCGTTCTAAGAAAGTCACTTGCTCATGGAGGTCTTGTGAGAGGTCTTCATGAGGCTGCTAAAGTTATTGAGAAACATGCTGCTCTTCTTTGTGTCTTAGCAGAGGACTGTAACCAGCCAGACTATCAAAAACTGGTCAAAGCTCTTTGTGCTGACCATAT...
Protein
Download Protein FASTA89 aa · LXL04_036721|LXL04_036721|OH1004|PROTEIN
MFNFSEEAVVPVEAPVATPAALGEPMDIMTTLQLVLRKSLAHGGLVRGLHEAAKVIEKHAALLCVLAEDCNQPDYQKLVKALCADHIYM
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_036721 |
|---|---|
| TK1151 ID | TkA07G438340 |
| OH-1004 ID | LXL04_036721 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 97.600 |
| Protein coverage (%) | TK1151 47.126 / OH-1004 92.135Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_036721 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:47131404-47132200 (-) | |||||||||
| Description | Similar to RPS12: 40S ribosomal protein S12 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0002181 cytoplasmic translation Biological Process GO:0006412 translation Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0090263 positive regulation of canonical Wnt signaling pathway Biological Process GO:1990145 maintenance of translational fidelity Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005777 peroxisome Cellular Component GO:0005840 ribosome Cellular Component GO:0015935 small ribosomal subunit Cellular Component GO:0022626 cytosolic ribosome Cellular Component GO:0022627 cytosolic small ribosomal subunit Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G15930 ath:AT2G32060 dme:Dmel_CG11271 ocu:100345945 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01248.32Ribosomal_L7Ae32-86 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_036721 | PF01248.32 | Ribosomal_L7Ae | 32 | 86 | 5.1e-14 | 52.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.